JAL-2114 save 'raw' ENA location as a sequence feature attribute

[jalview.git] / test / jalview / datamodel / xdb / embl / EmblFileTest.java

diff --git a/test/jalview/datamodel/xdb/embl/EmblFileTest.java b/test/jalview/datamodel/xdb/embl/EmblFileTest.java
index fda25e3..a62cb87 100644 (file)
--- a/test/jalview/datamodel/xdb/embl/EmblFileTest.java
+++ b/test/jalview/datamodel/xdb/embl/EmblFileTest.java
@@ -25,34 +25,17 @@ import static org.testng.AssertJUnit.assertNull;
 
 import jalview.datamodel.DBRefEntry;
 
-import java.io.StringReader;
 import java.util.Vector;
 
 import org.testng.annotations.Test;
 
 public class EmblFileTest
 {
-  // adapted from http://www.ebi.ac.uk/ena/data/view/x53828&display=xml
-  private static final String TESTDATA = "<?xml version=\"1.0\" encoding=\"UTF-8\" ?>"
-          + "<ROOT>"
-          + "<entry accession=\"X53828\" entryVersion=\"3\" lastUpdated=\"2005-04-18\" releaseCreated=\"25\" releaseLastUpdated=\"83\""
-          + " version=\"1\" moleculeType=\"mRNA\" topology=\"linear\" sequenceLength=\"1575\">"
-          + "<description>Chicken LDH-A mRNA for lactate dehydrogenase A chain (EC 1.1.1.27)</description>"
-          + "<keyword>L-lactate dehydrogenase</keyword><keyword>chutney</keyword>"
-          + "<xref db=\"EuropePMC\" id=\"PMC1460223\" secondaryId=\"9649548\" />"
-          + "<xref db=\"MD5\" id=\"d3b68\" />"
-          + "<feature name=\"CDS\" location=\"60..1058\">"
-          + "<xref db=\"GOA\" id=\"P00340\" secondaryId=\"2.1\" /><xref db=\"InterPro\" id=\"IPR001236\" />"
-          + "<qualifier name=\"note\"><value>L-lactate dehydrogenase A-chain</value><value>pickle</value></qualifier>"
-          + "<qualifier name=\"translation\"><value>MSLKDHLIHN</value><evidence>Keith</evidence></qualifier>"
-          + "</feature>"
-          + "<sequence>GTGACG</sequence></entry></ROOT>";
 
   @Test(groups = { "Functional" })
   public void testGetEmblFile()
   {
-    Vector<EmblEntry> entries = EmblFile.getEmblFile(
-            new StringReader(TESTDATA)).getEntries();
+    Vector<EmblEntry> entries = EmblTestHelper.getEmblFile().getEntries();
     assertEquals(1, entries.size());
     EmblEntry entry = entries.get(0);