String accId = "ABC123";
EnsemblCdna testee = new EnsemblCdna();
- SequenceFeature sf = new SequenceFeature("transcript", "", 20000,
- 20500, 0f, null);
+ SequenceFeature sf = new SequenceFeature("transcript", "", 20000, 20500,
+ 0f, null);
assertFalse(testee.retainFeature(sf, accId));
sf = new SequenceFeature("aberrant_processed_transcript", "", 20000,
20500, 0f, null);
assertFalse(testee.retainFeature(sf, accId));
- sf = new SequenceFeature("NMD_transcript_variant", "", 20000, 20500,
- 0f, null);
+ sf = new SequenceFeature("NMD_transcript_variant", "", 20000, 20500, 0f,
+ null);
assertFalse(testee.retainFeature(sf, accId));
// other feature with no parent is retained
- sf = new SequenceFeature("sequence_variant", "", 20000, 20500, 0f, null);
+ sf = new SequenceFeature("sequence_variant", "", 20000, 20500, 0f,
+ null);
assertTrue(testee.retainFeature(sf, accId));
// other feature with desired parent is retained