mungo merge

[jalview.git] / test / jalview / ext / ensembl / EnsemblProteinTest.java

diff --git a/test/jalview/ext/ensembl/EnsemblProteinTest.java b/test/jalview/ext/ensembl/EnsemblProteinTest.java
new file mode 100644 (file)
index 0000000..e6f6683
--- /dev/null
+++ b/test/jalview/ext/ensembl/EnsemblProteinTest.java
@@ -0,0 +1,47 @@
+package jalview.ext.ensembl;
+
+import static org.testng.AssertJUnit.assertEquals;
+
+import org.testng.Assert;
+import org.testng.annotations.Test;
+
+public class EnsemblProteinTest
+{
+
+  @Test(groups = "Functional")
+  public void testIsValidReference() throws Exception
+  {
+    EnsemblSequenceFetcher esq = new EnsemblProtein();
+    Assert.assertTrue(esq.isValidReference("CCDS5863.1"));
+    Assert.assertTrue(esq.isValidReference("ENSP00000288602"));
+    Assert.assertFalse(esq.isValidReference("ENST00000288602"));
+    Assert.assertFalse(esq.isValidReference("ENSG00000288602"));
+    // non-human species having a 3 character identifier included:
+    Assert.assertTrue(esq.isValidReference("ENSMUSP00000099398"));
+  }
+
+  @Test(groups = "Functional")
+  public void testGetAccesionIdFromQuery() throws Exception
+  {
+    EnsemblSequenceFetcher esq = new EnsemblProtein();
+    assertEquals("ENSP00000288602",
+            esq.getAccessionIdFromQuery("ENSP00000288602"));
+    assertEquals("ENSMUSP00000288602",
+            esq.getAccessionIdFromQuery("ENSMUSP00000288602"));
+
+    // ENST converted to ENSP
+    assertEquals("ENSP00000288602",
+            esq.getAccessionIdFromQuery("ENST00000288602"));
+    assertEquals("ENSMUSP00000288602",
+            esq.getAccessionIdFromQuery("ENSMUST00000288602"));
+
+    // with valid separator:
+    assertEquals("ENSP00000288604",
+            esq.getAccessionIdFromQuery("ENSP00000288604 ENSP00000288602"));
+
+    // with wrong separator:
+    assertEquals("ENSP00000288604,ENSP00000288602",
+            esq.getAccessionIdFromQuery("ENSP00000288604,ENSP00000288602"));
+  }
+
+}