--- /dev/null
+/**
+ *
+ */
+package jalview.ext.htsjdk;
+
+import jalview.datamodel.SequenceI;
+
+import java.io.File;
+
+import org.testng.Assert;
+import org.testng.annotations.Test;
+
+/**
+ * @author jprocter
+ *
+ */
+public class TestHtsContigDb
+{
+ @Test
+ public final void testHTSReferenceSequence() throws Exception
+ {
+ HtsContigDb remmadb = new HtsContigDb("REEMADB", new File(
+ "test/jalview/ext/htsjdk/pgmb.fasta"));
+
+ Assert.assertTrue(remmadb.isValid());
+
+ SequenceI sq = remmadb.getSequenceProxy("Deminut");
+ Assert.assertNotNull(sq);
+ Assert.assertNotEquals(0, sq.getLength());
+ }
+
+}