--- /dev/null
+package jalview.ext.jmol;
+
+import jalview.datamodel.Alignment;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.Sequence;
+import jalview.datamodel.SequenceI;
+import jalview.gui.AlignFrame;
+import jalview.gui.SequenceRenderer;
+import jalview.structure.StructureMappingcommandSet;
+import jalview.structure.StructureSelectionManager;
+
+import org.testng.annotations.Test;
+
+public class JmolCommandsTest
+{
+
+ @Test(groups = { "Functional" })
+ public void testGetColourBySequenceCommand_noFeatures()
+ {
+ SequenceI seq1 = new Sequence("seq1", "MHRSQTRALK");
+ SequenceI seq2 = new Sequence("seq2", "MRLEITQSGD");
+ AlignmentI al = new Alignment(new SequenceI[] { seq1, seq2 });
+ AlignFrame af = new AlignFrame(al, 800, 500);
+ SequenceRenderer sr = new SequenceRenderer(af.getViewport());
+ SequenceI[][] seqs = new SequenceI[][] { { seq1 }, { seq2 } };
+ String[] files = new String[] { "seq1.pdb", "seq2.pdb" };
+ StructureSelectionManager ssm = new StructureSelectionManager();
+
+ // need some mappings!
+
+ StructureMappingcommandSet[] commands = JmolCommands
+ .getColourBySequenceCommand(ssm, files, seqs, sr, null, al);
+ }
+}