mungo merge

[jalview.git] / test / jalview / ext / jmol / JmolCommandsTest.java

diff --git a/test/jalview/ext/jmol/JmolCommandsTest.java b/test/jalview/ext/jmol/JmolCommandsTest.java
new file mode 100644 (file)
index 0000000..46fa241
--- /dev/null
+++ b/test/jalview/ext/jmol/JmolCommandsTest.java
@@ -0,0 +1,34 @@
+package jalview.ext.jmol;
+
+import jalview.datamodel.Alignment;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.Sequence;
+import jalview.datamodel.SequenceI;
+import jalview.gui.AlignFrame;
+import jalview.gui.SequenceRenderer;
+import jalview.structure.StructureMappingcommandSet;
+import jalview.structure.StructureSelectionManager;
+
+import org.testng.annotations.Test;
+
+public class JmolCommandsTest
+{
+
+  @Test(groups = { "Functional" })
+  public void testGetColourBySequenceCommand_noFeatures()
+  {
+    SequenceI seq1 = new Sequence("seq1", "MHRSQTRALK");
+    SequenceI seq2 = new Sequence("seq2", "MRLEITQSGD");
+    AlignmentI al = new Alignment(new SequenceI[] { seq1, seq2 });
+    AlignFrame af = new AlignFrame(al, 800, 500);
+    SequenceRenderer sr = new SequenceRenderer(af.getViewport());
+    SequenceI[][] seqs = new SequenceI[][] { { seq1 }, { seq2 } };
+    String[] files = new String[] { "seq1.pdb", "seq2.pdb" };
+    StructureSelectionManager ssm = new StructureSelectionManager();
+
+    // need some mappings!
+
+    StructureMappingcommandSet[] commands = JmolCommands
+            .getColourBySequenceCommand(ssm, files, seqs, sr, null, al);
+  }
+}