JAL-2262 JAL-2195 unit test for bug

[jalview.git] / test / jalview / ext / jmol / JmolParserTest.java

diff --git a/test/jalview/ext/jmol/JmolParserTest.java b/test/jalview/ext/jmol/JmolParserTest.java
index f728d63..fb71f01 100644 (file)
--- a/test/jalview/ext/jmol/JmolParserTest.java
+++ b/test/jalview/ext/jmol/JmolParserTest.java
@@ -21,6 +21,7 @@
 package jalview.ext.jmol;
 
 import static org.testng.AssertJUnit.assertEquals;
+import static org.testng.AssertJUnit.assertNotNull;
 import static org.testng.AssertJUnit.assertTrue;
 
 import jalview.bin.Cache;
@@ -33,6 +34,7 @@ import jalview.io.FileLoader;
 import jalview.structure.StructureImportSettings;
 import jalview.structure.StructureImportSettings.StructureParser;
 
+import java.io.IOException;
 import java.util.Vector;
 
 import org.jmol.c.STR;
@@ -183,8 +185,7 @@ public class JmolParserTest
   public void testParse_missingResidues() throws Exception
   {
     PDBfile mctest = new PDBfile(false, false, false,
-            pastePDBDataWithChainBreak,
-            AppletFormatAdapter.PASTE);
+            pastePDBDataWithChainBreak, AppletFormatAdapter.PASTE);
     JmolParser jtest = new JmolParser(pastePDBDataWithChainBreak,
             AppletFormatAdapter.PASTE);
     Vector<SequenceI> seqs = jtest.getSeqs();
@@ -212,7 +213,7 @@ public class JmolParserTest
             AppletFormatAdapter.PASTE);
     Vector<SequenceI> seqs = jtest.getSeqs();
     Vector<SequenceI> mcseqs = mctest.getSeqs();
-  
+
     assertEquals("Failed to find 1 sequence\n", 1, seqs.size());
     assertEquals("Failed to find 1 sequence\n", 1, mcseqs.size());
     assertEquals("ALC", seqs.get(0).getSequenceAsString());
@@ -249,4 +250,26 @@ public class JmolParserTest
     assertEquals('H', structCode[4]);
     assertEquals('E', structCode[5]);
   }
+
+  @Test(groups = "Functional")
+  public void testLocalPDBId()
+  {
+    JmolParser structureData;
+    try
+    {
+      structureData = new JmolParser("examples/DNMT1_MOUSE.pdb",
+              AppletFormatAdapter.FILE);
+      assertNotNull(structureData);
+      assertNotNull(structureData.getId());
+      assertEquals(structureData.getId(), "DNMT1_MOUSE.pdb");
+      assertNotNull(structureData.getSeqs());
+      assertNotNull(structureData.getSeqs().get(0).getSequenceFeatures()[0].featureGroup);
+      assertEquals(
+              structureData.getSeqs().get(0).getSequenceFeatures()[0].featureGroup,
+              "dnmt1_mouse.pdb");
+    } catch (IOException e)
+    {
+      e.printStackTrace();
+    }
+  }
 }