Fixed failing tests

[jalview.git] / test / jalview / ext / jmol / JmolViewerTest.java

diff --git a/test/jalview/ext/jmol/JmolViewerTest.java b/test/jalview/ext/jmol/JmolViewerTest.java
index 4a59044..792f7ad 100644 (file)
--- a/test/jalview/ext/jmol/JmolViewerTest.java
+++ b/test/jalview/ext/jmol/JmolViewerTest.java
@@ -33,7 +33,6 @@ import jalview.gui.StructureViewer;
 import jalview.gui.StructureViewer.ViewerType;
 import jalview.io.DataSourceType;
 
-import org.testng.Assert;
 import org.testng.annotations.AfterClass;
 import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
@@ -117,56 +116,5 @@ public class JmolViewerTest
     }
   }
 
-  @Test(groups = { "Functional", "Network" })
-  public void testStructureLoadingViaURL()
-  {
-    Cache.setProperty(Preferences.STRUCTURE_DISPLAY, ViewerType.JMOL.name());
-    String inFile = "http://www.jalview.org/builds/develop/examples/3W5V.pdb";
-    AlignFrame af = new jalview.io.FileLoader().LoadFileWaitTillLoaded(
-            inFile, DataSourceType.URL);
-    assertTrue("Didn't read input file " + inFile, af != null);
-    for (SequenceI sq : af.getViewport().getAlignment().getSequences())
-    {
-      SequenceI dsq = sq.getDatasetSequence();
-      while (dsq.getDatasetSequence() != null)
-      {
-        dsq = dsq.getDatasetSequence();
-      }
-      if (dsq.getAllPDBEntries() != null
-              && dsq.getAllPDBEntries().size() > 0)
-      {
-        for (int q = 0; q < dsq.getAllPDBEntries().size(); q++)
-        {
-          final StructureViewer structureViewer = new StructureViewer(af
-                  .getViewport().getStructureSelectionManager());
-          structureViewer.setViewerType(ViewerType.JMOL);
-          JalviewStructureDisplayI jmolViewer = structureViewer
-                  .viewStructures(dsq.getAllPDBEntries().elementAt(q),
-                          new SequenceI[] { sq }, af.getCurrentView()
-                                  .getAlignPanel());
-          /*
-          * Wait for viewer load thread to complete
-          */
-          try
-          {
-            while (!jmolViewer.getBinding().isFinishedInit())
-            {
-              Thread.sleep(500);
-            }
-          } catch (InterruptedException e)
-          {
-          }
-          // System.out.println(">>>>>>>>>>>>>>>>> "
-          // + jmolViewer.getBinding().getPdbFile());
-          String[] expectedModelFiles = new String[] { "http://www.jalview.org/builds/develop/examples/3W5V.pdb" };
-          String[] actualModelFiles = jmolViewer.getBinding().getStructureFiles();
-          Assert.assertEqualsNoOrder(actualModelFiles, expectedModelFiles);
-          jmolViewer.closeViewer(true);
-          // todo: break here means only once through this loop?
-          break;
-        }
-        break;
-      }
-    }
-  }
+
 }