package jalview.ext.jmol;
import jalview.datamodel.SequenceI;
-import jalview.io.AppletFormatAdapter;
+import jalview.gui.JvOptionPane;
+import jalview.io.DataSourceType;
import java.io.File;
import java.io.IOException;
import java.util.Set;
import java.util.Vector;
+import org.testng.annotations.BeforeClass;
+
import MCview.PDBfile;
/**
public class JmolVsJalviewPDBParserEndToEndTest
{
+ @BeforeClass(alwaysRun = true)
+ public void setUpJvOptionPane()
+ {
+ JvOptionPane.setInteractiveMode(false);
+ JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+ }
+
public static void main(String[] args)
{
if (args == null || args[0] == null)
JmolParser jtest = null;
try
{
- mctest = new PDBfile(false, false, false, testFile,
- AppletFormatAdapter.FILE);
- jtest = new JmolParser(testFile, AppletFormatAdapter.FILE);
+ mctest = new PDBfile(false, false, false, testFile, DataSourceType.FILE);
+ jtest = new JmolParser(testFile, DataSourceType.FILE);
} catch (IOException e)
{
System.err.println("Exception thrown while parsing : " + pdbStr);