temp push

[jalview.git] / test / jalview / gui / AlignFrameTest.java

diff --git a/test/jalview/gui/AlignFrameTest.java b/test/jalview/gui/AlignFrameTest.java
index 3e82547..5778997 100644 (file)
--- a/test/jalview/gui/AlignFrameTest.java
+++ b/test/jalview/gui/AlignFrameTest.java
@@ -75,7 +75,7 @@ public class AlignFrameTest
   @AfterMethod(alwaysRun = true)
   public void tearDown()
   {
-    Desktop.instance.closeAll_actionPerformed(null);
+    Desktop.getInstance().closeAll_actionPerformed(null);
   }
 
   /**
@@ -86,7 +86,7 @@ public class AlignFrameTest
   public void setUp()
   {
     Cache.loadProperties("test/jalview/io/testProps.jvprops");
-    Cache.applicationProperties.setProperty("SHOW_IDENTITY",
+    Cache.setPropertyNoSave("SHOW_IDENTITY",
             Boolean.TRUE.toString());
     af = new FileLoader().LoadFileWaitTillLoaded("examples/uniref50.fa",
             DataSourceType.FILE);
@@ -261,8 +261,11 @@ public class AlignFrameTest
 
     /*
      * apply 30% Conservation to group
+     * (notice menu action applies to selection group even if mouse click
+     * is at a sequence not in the group)
      */
-    PopupMenu popupMenu = new PopupMenu(af.alignPanel, null, null);
+    PopupMenu popupMenu = new PopupMenu(af.alignPanel, al.getSequenceAt(2),
+            null);
     popupMenu.changeColour_actionPerformed(JalviewColourScheme.Strand
             .toString());
     assertTrue(sg.getColourScheme() instanceof StrandColourScheme);
@@ -540,7 +543,8 @@ public class AlignFrameTest
     sg.setStartRes(15);
     sg.setEndRes(25);
     av.setSelectionGroup(sg);
-    PopupMenu popupMenu = new PopupMenu(af.alignPanel, null, null);
+    PopupMenu popupMenu = new PopupMenu(af.alignPanel, al.getSequenceAt(0),
+            null);
     popupMenu.changeColour_actionPerformed(JalviewColourScheme.Strand
             .toString());
     assertTrue(sg.getColourScheme() instanceof StrandColourScheme);