types = AnnotationChooser.getAnnotationTypes(parentPanel.getAlignment(),
false);
- assertEquals("Not six annotation types", 8, types.size());
+ assertEquals("Not six annotation types", 7, types.size());
assertTrue("IUPRED missing", types.contains("IUPRED"));
assertTrue("JMol missing", types.contains("JMol"));
assertTrue("Beauty missing", types.contains("Beauty"));
assertTrue(anns[0].visible); // Conservation
assertTrue(anns[1].visible); // Quality
assertTrue(anns[2].visible); // Consensus
- assertTrue(anns[3].visible); // SS Consensus
- assertTrue(anns[4].visible); // Occupancy
- assertTrue(anns[5].visible); // IUPred for seq0
- assertTrue(anns[6].visible); // Beauty
- assertFalse(anns[7].visible); // JMol for seq3 - not selected but hidden
- assertTrue(anns[8].visible); // IUPRED for seq2
- assertFalse(anns[9].visible); // JMol for seq1 - selected and hidden
+ assertTrue(anns[3].visible); // Occupancy
+ assertTrue(anns[4].visible); // IUPred for seq0
+ assertTrue(anns[5].visible); // Beauty
+ assertFalse(anns[6].visible); // JMol for seq3 - not selected but hidden
+ assertTrue(anns[7].visible); // IUPRED for seq2
+ assertFalse(anns[8].visible); // JMol for seq1 - selected and hidden
}
/**
assertTrue(anns[0].visible); // Conservation
assertTrue(anns[1].visible); // Quality
assertTrue(anns[2].visible); // Consensus
- assertTrue(anns[3].visible); // SS ßConsensus
- assertTrue(anns[4].visible); // Occupancy
- assertTrue(anns[5].visible); // IUPred for seq0
- assertTrue(anns[6].visible); // Beauty
- assertTrue(anns[7].visible); // JMol for seq3 not in selection group
- assertTrue(anns[8].visible); // IUPRED for seq2
- assertFalse(anns[9].visible); // JMol for seq1 in selection group
+ assertTrue(anns[3].visible); // Occupancy
+ assertTrue(anns[4].visible); // IUPred for seq0
+ assertTrue(anns[5].visible); // Beauty
+ assertTrue(anns[6].visible); // JMol for seq3 not in selection group
+ assertTrue(anns[7].visible); // IUPRED for seq2
+ assertFalse(anns[8].visible); // JMol for seq1 in selection group
}
/**
assertTrue(anns[0].visible); // Conservation
assertTrue(anns[1].visible); // Quality
assertTrue(anns[2].visible); // Consensus
- assertTrue(anns[3].visible); // Consensus
- assertTrue(anns[4].visible); // Occupancy
- assertTrue(anns[5].visible); // IUPred for seq0
- assertTrue(anns[6].visible); // Beauty
- assertFalse(anns[7].visible); // JMol for seq3
- assertTrue(anns[8].visible); // IUPRED for seq2
- assertFalse(anns[9].visible); // JMol for seq1
+ assertTrue(anns[3].visible); // Occupancy
+ assertTrue(anns[4].visible); // IUPred for seq0
+ assertTrue(anns[5].visible); // Beauty
+ assertFalse(anns[6].visible); // JMol for seq3
+ assertTrue(anns[7].visible); // IUPRED for seq2
+ assertFalse(anns[8].visible); // JMol for seq1
}
/**
assertTrue(anns[0].visible); // Conservation
assertTrue(anns[1].visible); // Quality
assertTrue(anns[2].visible); // Consensus
- assertTrue(anns[3].visible); // Consensus
- assertTrue(anns[4].visible); // Occupancy
- assertTrue(anns[5].visible); // IUPred for seq0
- assertTrue(anns[6].visible); // Beauty
- assertTrue(anns[7].visible); // JMol for seq3 not in selection group
- assertTrue(anns[8].visible); // IUPRED for seq2
- assertFalse(anns[9].visible); // JMol for seq1 in selection group
+ assertTrue(anns[3].visible); // Occupancy
+ assertTrue(anns[4].visible); // IUPred for seq0
+ assertTrue(anns[5].visible); // Beauty
+ assertTrue(anns[6].visible); // JMol for seq3 not in selection group
+ assertTrue(anns[7].visible); // IUPRED for seq2
+ assertFalse(anns[8].visible); // JMol for seq1 in selection group
}
/**
assertTrue(anns[0].visible); // Conservation
assertTrue(anns[1].visible); // Quality
assertTrue(anns[2].visible); // Consensus
- assertTrue(anns[3].visible); // SS Consensus
- assertTrue(anns[4].visible); // Occupancy
- assertFalse(anns[5].visible); // IUPRED
- assertTrue(anns[6].visible); // Beauty (not seq-related)
- assertFalse(anns[7].visible); // JMol
- assertFalse(anns[8].visible); // IUPRED
- assertFalse(anns[9].visible); // JMol
+ assertTrue(anns[3].visible); // Occupancy
+ assertFalse(anns[4].visible); // IUPRED
+ assertTrue(anns[5].visible); // Beauty (not seq-related)
+ assertFalse(anns[6].visible); // JMol
+ assertFalse(anns[7].visible); // IUPRED
+ assertFalse(anns[8].visible); // JMol
// reset - should all be visible
testee.resetOriginalState();