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Merge branch 'develop' into features/JAL-518_justify_seqs_in_region
[jalview.git] / test / jalview / gui / FeatureSettingsTest.java
diff --git a/test/jalview/gui/FeatureSettingsTest.java b/test/jalview/gui/FeatureSettingsTest.java
index f0b3aef..12c4c6c 100644 (file)
--- a/test/jalview/gui/FeatureSettingsTest.java
+++ b/test/jalview/gui/FeatureSettingsTest.java
@@ -29,16 +29,23 @@ import java.io.File;
 import java.io.IOException;
 import java.util.HashMap;
 
+import org.testng.annotations.AfterMethod;
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
 import jalview.api.FeatureColourI;
+import jalview.bin.Cache;
+import jalview.bin.Jalview;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
 import jalview.datamodel.features.FeatureMatcher;
 import jalview.datamodel.features.FeatureMatcherSet;
 import jalview.datamodel.features.FeatureMatcherSetI;
 import jalview.io.DataSourceType;
+import jalview.io.FileFormat;
+import jalview.io.FileFormatI;
 import jalview.io.FileLoader;
+import jalview.io.IdentifyFile;
 import jalview.schemes.FeatureColour;
 import jalview.schemes.FeatureColourTest;
 import jalview.util.matcher.Condition;
@@ -46,6 +53,23 @@ import jalview.viewmodel.seqfeatures.FeatureRendererModel;
 
 public class FeatureSettingsTest
 {
+  @BeforeClass(alwaysRun = true)
+  public static void setUpBeforeClass() throws Exception
+  {
+    /*
+     * use read-only test properties file
+     */
+    Cache.loadProperties("test/jalview/io/testProps.jvprops");
+    Jalview.main(new String[] { "--nonews" });
+  }
+
+  @AfterMethod(alwaysRun = true)
+  public void tearDown()
+  {
+    if (Desktop.instance != null)
+      Desktop.instance.closeAll_actionPerformed(null);
+  }
+
   /**
    * Test a roundtrip of save and reload of feature colours and filters as XML
    * 
@@ -257,4 +281,19 @@ public class FeatureSettingsTest
             "<html>By Score (&gt; 4.0)<br>" + simpleTooltip
                     + "</br></html>");
   }
+
+  String fsfile = "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"yes\"?><ns2:JalviewUserColours schemeName=\"Sequence Features\" xmlns:ns2=\"www.jalview.org/colours\">",
+          fsfile2 = "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"yes\"?>\n<ns2:JalviewUserColours schemeName=\"Sequence Features\" xmlns:ns2=\"www.jalview.org/colours\">";
+
+  @Test(groups = "Functional")
+  public void testIdentifyFeatureSettingsFile() throws Exception
+  {
+    FileFormatI type = new IdentifyFile().identify(fsfile,
+            DataSourceType.PASTE);
+    assertTrue(FileFormat.FeatureSettings == type,
+            "Feature settings file was identified as " + type);
+    type = new IdentifyFile().identify(fsfile2, DataSourceType.PASTE);
+    assertTrue(FileFormat.FeatureSettings == type,
+            "Feature settings file with newline was identified as " + type);
+  }
 }