JAL-1737 updated JUnit so it creates positional annotations

[jalview.git] / test / jalview / gui / PopupMenuTest.java

diff --git a/test/jalview/gui/PopupMenuTest.java b/test/jalview/gui/PopupMenuTest.java
index f2248a8..e1f0708 100644 (file)
--- a/test/jalview/gui/PopupMenuTest.java
+++ b/test/jalview/gui/PopupMenuTest.java
@@ -19,6 +19,7 @@ import org.junit.Test;
 
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
+import jalview.datamodel.Annotation;
 import jalview.datamodel.SequenceI;
 import jalview.io.AppletFormatAdapter;
 import jalview.io.FormatAdapter;
@@ -238,28 +239,32 @@ public class PopupMenuTest
 
     // PDB.secondary structure on Sequence0
     AlignmentAnnotation annotation = new AlignmentAnnotation(
-            "secondary structure", "", 0);
+            "secondary structure", "", new Annotation[]
+                    {});
     annotation.setCalcId("PDB");
     annotation.visible = true;
     seqs.get(0).addAlignmentAnnotation(annotation);
     parentPanel.getAlignment().addAnnotation(annotation);
 
     // JMOL.secondary structure on Sequence0 - hidden
-    annotation = new AlignmentAnnotation("secondary structure", "", 0);
+    annotation = new AlignmentAnnotation("secondary structure", "", new Annotation[]
+            {});
     annotation.setCalcId("JMOL");
     annotation.visible = false;
     seqs.get(0).addAlignmentAnnotation(annotation);
     parentPanel.getAlignment().addAnnotation(annotation);
 
     // Jpred.SSP on Sequence0 - hidden
-    annotation = new AlignmentAnnotation("SSP", "", 0);
+    annotation = new AlignmentAnnotation("SSP", "", new Annotation[]
+            {});
     annotation.setCalcId("JPred");
     annotation.visible = false;
     seqs.get(0).addAlignmentAnnotation(annotation);
     parentPanel.getAlignment().addAnnotation(annotation);
 
     // PDB.Temp on Sequence1
-    annotation = new AlignmentAnnotation("Temp", "", 0);
+    annotation = new AlignmentAnnotation("Temp", "", new Annotation[]
+            {});
     annotation.setCalcId("PDB");
     annotation.visible = true;
     seqs.get(1).addAlignmentAnnotation(annotation);
@@ -316,14 +321,16 @@ public class PopupMenuTest
 
     // PDB.secondary structure on Sequence0
     AlignmentAnnotation annotation = new AlignmentAnnotation(
-            "secondary structure", "", 0);
+            "secondary structure", "", new Annotation[]
+            {});
     annotation.setCalcId("PDB");
     annotation.visible = true;
     seqs.get(0).addAlignmentAnnotation(annotation);
     parentPanel.getAlignment().addAnnotation(annotation);
 
     // PDB.Temp on Sequence1
-    annotation = new AlignmentAnnotation("Temp", "", 0);
+    annotation = new AlignmentAnnotation("Temp", "", new Annotation[]
+    {});
     annotation.setCalcId("PDB");
     annotation.visible = true;
     seqs.get(1).addAlignmentAnnotation(annotation);
@@ -373,14 +380,16 @@ public class PopupMenuTest
 
     // PDB.secondary structure on Sequence0
     AlignmentAnnotation annotation = new AlignmentAnnotation(
-            "secondary structure", "", 0);
+            "secondary structure", "", new Annotation[]
+            {});
     annotation.setCalcId("PDB");
     annotation.visible = false;
     seqs.get(0).addAlignmentAnnotation(annotation);
     parentPanel.getAlignment().addAnnotation(annotation);
 
     // PDB.Temp on Sequence1
-    annotation = new AlignmentAnnotation("Temp", "", 0);
+    annotation = new AlignmentAnnotation("Temp", "", new Annotation[]
+    {});
     annotation.setCalcId("PDB2");
     annotation.visible = false;
     seqs.get(1).addAlignmentAnnotation(annotation);