Merge branch 'develop' into features/JAL-250_hideredundantseqs

[jalview.git] / test / jalview / gui / SeqPanelTest.java

diff --git a/test/jalview/gui/SeqPanelTest.java b/test/jalview/gui/SeqPanelTest.java
new file mode 100644 (file)
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--- /dev/null
+++ b/test/jalview/gui/SeqPanelTest.java
@@ -0,0 +1,91 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.gui;
+
+import static org.testng.Assert.assertEquals;
+
+import jalview.datamodel.Alignment;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.Sequence;
+import jalview.datamodel.SequenceI;
+
+import org.testng.annotations.BeforeClass;
+import org.testng.annotations.Test;
+
+public class SeqPanelTest
+{
+  AlignFrame af;
+
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+  @Test(groups = "Functional")
+  public void testSetStatusReturnsNearestResiduePosition()
+  {
+    SequenceI seq1 = new Sequence("Seq1", "AACDE");
+    SequenceI seq2 = new Sequence("Seq2", "AA--E");
+    AlignmentI al = new Alignment(new SequenceI[] { seq1, seq2 });
+    AlignFrame alignFrame = new AlignFrame(al, al.getWidth(),
+            al.getHeight());
+    AlignmentI visAl = alignFrame.getViewport().getAlignment();
+
+    // Test either side of gap
+    assertEquals(
+            alignFrame.alignPanel.getSeqPanel().setStatusMessage(
+                    visAl.getSequenceAt(1), 1, 1), 2);
+    assertEquals(alignFrame.statusBar.getText(),
+            "Sequence 2 ID: Seq2 Residue: ALA (2)");
+    assertEquals(
+            alignFrame.alignPanel.getSeqPanel().setStatusMessage(
+                    visAl.getSequenceAt(1), 4, 1), 3);
+    assertEquals(alignFrame.statusBar.getText(),
+            "Sequence 2 ID: Seq2 Residue: GLU (3)");
+    // no status message at a gap, returns next residue position to the right
+    assertEquals(
+            alignFrame.alignPanel.getSeqPanel().setStatusMessage(
+                    visAl.getSequenceAt(1), 2, 1), 3);
+    assertEquals(alignFrame.statusBar.getText(), "Sequence 2 ID: Seq2");
+    assertEquals(
+            alignFrame.alignPanel.getSeqPanel().setStatusMessage(
+                    visAl.getSequenceAt(1), 3, 1), 3);
+    assertEquals(alignFrame.statusBar.getText(), "Sequence 2 ID: Seq2");
+  }
+
+  @Test(groups = "Functional")
+  public void testAmbiguousAminoAcidGetsStatusMessage()
+  {
+    SequenceI seq1 = new Sequence("Seq1", "ABCDE");
+    SequenceI seq2 = new Sequence("Seq2", "AB--E");
+    AlignmentI al = new Alignment(new SequenceI[] { seq1, seq2 });
+    AlignFrame alignFrame = new AlignFrame(al, al.getWidth(),
+            al.getHeight());
+    AlignmentI visAl = alignFrame.getViewport().getAlignment();
+
+    assertEquals(
+            alignFrame.alignPanel.getSeqPanel().setStatusMessage(
+                    visAl.getSequenceAt(1), 1, 1), 2);
+    assertEquals(alignFrame.statusBar.getText(),
+            "Sequence 2 ID: Seq2 Residue: B (2)");
+  }
+}