import jalview.datamodel.SequenceI;
import jalview.fts.api.FTSData;
import jalview.jbgui.GStructureChooser.FilterOption;
+import jalview.ws.params.InvalidArgumentException;
import java.util.Collection;
import java.util.Vector;
seq = null;
}
+ @SuppressWarnings("deprecation")
@Test(groups = { "Functional" })
public void buildQueryTest()
{
+ System.out.println("seq >>>> " + seq);
String query = StructureChooser.buildQuery(seq);
assertEquals("pdb_id:1tim", query);
- System.out.println("seq >>>> " + seq);
seq.getAllPDBEntries().clear();
query = StructureChooser.buildQuery(seq);
assertEquals(
query);
seq.setDBRefs(null);
query = StructureChooser.buildQuery(seq);
+ System.out.println(query);
assertEquals("text:4kqy", query);
DBRefEntry uniprotDBRef = new DBRefEntry();
dbRef.setAccessionId("XYZ_" + x);
seq.addDBRef(dbRef);
}
+ System.out.println("");
+ System.out.println(seq.getDBRefs());
+ System.out.println(query);
query = StructureChooser.buildQuery(seq);
assertEquals(
"uniprot_accession:P12345 OR uniprot_id:P12345 OR pdb_id:1xyz",