AlignFrame af = new jalview.io.FileLoader().LoadFileWaitTillLoaded(
inFile, DataSourceType.FILE);
assertTrue("Didn't read input file " + inFile, af != null);
+ af.saveAlignment(tfile, FileFormat.Jalview);
assertTrue("Failed to store as a project.",
- af.saveAlignment(tfile, FileFormat.Jalview));
+ af.isSaveAlignmentSuccessful());
af.closeMenuItem_actionPerformed(true);
af = null;
af = new jalview.io.FileLoader().LoadFileWaitTillLoaded(tfile,