import jalview.datamodel.SequenceI;
import jalview.gui.AlignFrame;
import jalview.structure.StructureImportSettings;
-import jalview.structure.StructureImportSettings.StructureParser;
import java.io.File;
{
System.out.println("CalcId: " + aa.getCalcId());
- if (StructureImportSettings.getDefaultPDBFileParser().equals(
- StructureParser.JALVIEW_PARSER))
- {
- assertTrue(MCview.PDBfile.isCalcIdForFile(aa, pdbId));
- }
+ // if (StructureImportSettings.getDefaultPDBFileParser().equals(
+ // StructureParser.JALVIEW_PARSER))
+ // {
+ // assertTrue(MCview.PDBfile.isCalcIdForFile(aa, pdbId));
+ // }
}
}
}
SequenceFeature[] sf = al.getSequenceAt(0).getSequenceFeatures();
assertEquals(296, sf.length);
assertEquals("RESNUM", sf[0].getType());
- assertEquals("GLU:19 1gaqA", sf[0].getDescription());
+ assertEquals("GLU: 19 1gaqA", sf[0].getDescription());
assertEquals("RESNUM", sf[295].getType());
- assertEquals("TYR:314 1gaqA", sf[295].getDescription());
+ assertEquals("TYR: 314 1gaqA", sf[295].getDescription());
/*
* 1GAQ/B
sf = al.getSequenceAt(1).getSequenceFeatures();
assertEquals(98, sf.length);
assertEquals("RESNUM", sf[0].getType());
- assertEquals("ALA:1 1gaqB", sf[0].getDescription());
+ assertEquals("ALA: 1 1gaqB", sf[0].getDescription());
assertEquals("RESNUM", sf[97].getType());
- assertEquals("ALA:98 1gaqB", sf[97].getDescription());
+ assertEquals("ALA: 98 1gaqB", sf[97].getDescription());
/*
* 1GAQ/C
sf = al.getSequenceAt(2).getSequenceFeatures();
assertEquals(296, sf.length);
assertEquals("RESNUM", sf[0].getType());
- assertEquals("GLU:19 1gaqC", sf[0].getDescription());
+ assertEquals("GLU: 19 1gaqC", sf[0].getDescription());
assertEquals("RESNUM", sf[295].getType());
- assertEquals("TYR:314 1gaqC", sf[295].getDescription());
+ assertEquals("TYR: 314 1gaqC", sf[295].getDescription());
}
@Test(groups = { "Functional" })