new AnnotationFile().readAnnotationFile(al, cs, af,
FormatAdapter.FILE));
- ViewDef[] v = new ViewDef[1];
AnnotationFile aff = new AnnotationFile();
- v[0] = aff.new ViewDef(null, al.getHiddenSequences(), cs,
+ ViewDef v = aff.new ViewDef(null, al.getHiddenSequences(), cs,
new Hashtable());
String anfileout = new AnnotationFile().printAnnotations(
al.getAlignmentAnnotation(), al.getGroups(),
- al.getProperties(), v);
+ al.getProperties(), null, al, v);
assertTrue(
"Test "
+ testname