JAL-1641 Further refactoring of JSON export option, introduction of Viewport to the...

[jalview.git] / test / jalview / io / BioJsHTMLOutputTest.java

diff --git a/test/jalview/io/BioJsHTMLOutputTest.java b/test/jalview/io/BioJsHTMLOutputTest.java
index bb8784a..8c4b639 100644 (file)
--- a/test/jalview/io/BioJsHTMLOutputTest.java
+++ b/test/jalview/io/BioJsHTMLOutputTest.java
@@ -1,103 +1,19 @@
 package jalview.io;
 
-import jalview.datamodel.Alignment;
-import jalview.datamodel.Sequence;
+import org.junit.Ignore;
+import org.junit.Test;
 
-import java.io.IOException;
-import java.util.Iterator;
-
-import org.json.simple.JSONArray;
-import org.json.simple.JSONObject;
-import org.json.simple.parser.JSONParser;
-import org.json.simple.parser.ParseException;
-import org.junit.Assert;
-
-import com.json.JSONException;
 
 public class BioJsHTMLOutputTest
 {
 
 
-  // @Test
+  @Test
+  @Ignore
   public void getJalviewAlignmentAsJsonString()
   {
     BioJsHTMLOutput bioJsHtmlOuput = new BioJsHTMLOutput(null, null);
-    bioJsHtmlOuput.setGlobalColorScheme("Zappo");
-
-    Sequence[] seqs = new Sequence[1];
-    Sequence seq = new Sequence("name", "ABCDEFGHIJKLMNOPQRSTUVWXYZ", 1, 26);
-    // SequenceFeature seqFeature = new SequenceFeature("type", "desc",
-    // "status", 1, 5, "jalview");
-    // seq.addSequenceFeature(seqFeature);
-    seq.setDatasetSequence(seq);
-    seqs[0] = seq;
-
-    Alignment al = new Alignment(seqs);
-    try
-    {
-
-      JSONParser jsonParser = new JSONParser();
-      String actualJsonString = bioJsHtmlOuput
-              .getJalviewAlignmentAsJsonString(al);
-
-      JSONObject actualJsonObj = (JSONObject) jsonParser.parse(actualJsonString);
-
-      // System.out.println("Output : " + actualJsonString);
-      Assert.assertTrue(actualJsonObj.get("globalColorScheme") != null); 
-      Assert.assertTrue((actualJsonObj.get("globalColorScheme").toString()).equals("zappo")); 
-      
-      Assert.assertTrue(actualJsonObj.get("webStartUrl") != null);
-      Assert.assertTrue((actualJsonObj.get("webStartUrl").toString())
-              .equals("http://www.jalview.org/services/launchApp"));
-
-      JSONArray actualSeqJsonObj = (JSONArray) actualJsonObj.get("seqs");
-      Assert.assertTrue(actualSeqJsonObj != null);
-      Assert.assertTrue(actualSeqJsonObj.size() == 1);
-
-      @SuppressWarnings("unchecked")
-      Iterator<JSONObject> jsonIter = actualSeqJsonObj.iterator();
-      JSONObject jsonSeq = jsonIter.next();
-      Assert.assertTrue(jsonSeq != null);
-
-      Assert.assertTrue("'name' cannot be null!",
-              jsonSeq.get("name") != null);
-      Assert.assertTrue("Expected name mismatched!",
-              (jsonSeq.get("name").toString())
-              .equals("name/1-26"));
-
-      Assert.assertTrue("'seq' cannot be null!", jsonSeq.get("seq") != null);
-      Assert.assertTrue("Expected sequence mismatched!", (jsonSeq
-              .get("seq").toString())
-              .equals("ABCDEFGHIJKLMNOPQRSTUVWXYZ"));
-
-      Assert.assertTrue("'id' cannot be null!", jsonSeq.get("id") != null);
-      Assert.assertTrue("Expected id mismatched!",
-              (jsonSeq.get("id").toString()).equals("1"));
-
-      Assert.assertTrue("'start' cannot be null!",
-              jsonSeq.get("start") != null);
-      Assert.assertTrue("Expected start mismatched!",
-              (jsonSeq.get("start").toString()).equals("1"));
-
-      Assert.assertTrue("'end' cannot be null!", jsonSeq.get("end") != null);
-      Assert.assertTrue("Expected end mismatched!",
-              (jsonSeq.get("end").toString()).equals("26"));
-
-      Assert.assertTrue("'features' cannot be null!",
-              jsonSeq.get("features") != null);
-      Assert.assertTrue("Expected features mismatched!",
-              jsonSeq.get("features").toString().equals("[]"));
 
-    } catch (IOException e)
-    {
-      e.printStackTrace();
-    } catch (JSONException e)
-    {
-      e.printStackTrace();
-    } catch (ParseException e)
-    {
-      e.printStackTrace();
-    }
   }
   
 }