House keeping

[jalview.git] / test / jalview / io / BioJsHTMLOutputTest.java

diff --git a/test/jalview/io/BioJsHTMLOutputTest.java b/test/jalview/io/BioJsHTMLOutputTest.java
new file mode 100644 (file)
index 0000000..cbda794
--- /dev/null
+++ b/test/jalview/io/BioJsHTMLOutputTest.java
@@ -0,0 +1,47 @@
+package jalview.io;
+
+import jalview.datamodel.Alignment;
+import jalview.datamodel.Sequence;
+
+import java.io.IOException;
+
+import org.junit.Test;
+
+import com.json.JSONException;
+
+public class BioJsHTMLOutputTest
+{
+
+
+  @Test
+  public void getJalviewAlignmentAsJsonString()
+  {
+    BioJsHTMLOutput bioJsHtmlOuput = new BioJsHTMLOutput(null, null);
+    bioJsHtmlOuput.setGlobalColorScheme("Zappo");
+
+    Sequence[] seqs = new Sequence[1];
+    Sequence seq = new Sequence("name", "ABCDEFGHIJKLMNOPQRSTUVWXYZ", 1, 26);
+    // SequenceFeature seqFeature = new SequenceFeature("type", "desc",
+    // "status", 1, 5, "jalview");
+    // seq.addSequenceFeature(seqFeature);
+    seq.setDatasetSequence(seq);
+    seqs[0] = seq;
+
+    Alignment al = new Alignment(seqs);
+    try
+    {
+      String generatedJson = bioJsHtmlOuput
+              .getJalviewAlignmentAsJsonString(al);
+      assert (generatedJson
+              .equalsIgnoreCase("{\"globalColorScheme\":\"zappo\",\"seqs\":[{\"id\":\"1\",\"start\":1,\"name\":\"name/1-26\",\"features\":[],\"seq\":\"ABCDEFGHIJKLMNOPQRSTUVWXYZ\",\"end\":26}]}"));
+      System.out.println("Output : " + generatedJson);
+    } catch (IOException e)
+    {
+      e.printStackTrace();
+    } catch (JSONException e)
+    {
+      e.printStackTrace();
+    }
+  }
+
+}