JAL-1620 version bump and release notes

[jalview.git] / test / jalview / io / FileIOTester.java

diff --git a/test/jalview/io/FileIOTester.java b/test/jalview/io/FileIOTester.java
index 2d572fe..926b908 100644 (file)
--- a/test/jalview/io/FileIOTester.java
+++ b/test/jalview/io/FileIOTester.java
@@ -1,5 +1,5 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
  * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
@@ -31,7 +31,7 @@ import org.junit.Test;
 
 /**
  * @author jimp
- *
+ * 
  */
 public class FileIOTester
 {
@@ -51,38 +51,53 @@ public class FileIOTester
   public static void tearDownAfterClass() throws Exception
   {
   }
+
   // TODO: make a better/more comprehensive test harness for identify/io
-  
-  final static File ALIGN_FILE = new File("test/jalview/io/test_gz_fasta.gz");
-  final static File NOTGZALIGN_FILE = new File("test/jalview/io/test_gz_fasta_notgz.gz");
-  final static File STARS_FA_FILE1 = new File("test/jalview/io/test_fasta_stars.fa");
-  final static File STARS_FA_FILE2 = new File("test/jalview/io/test_fasta_stars2.fa");
+
+  final static File ALIGN_FILE = new File(
+          "test/jalview/io/test_gz_fasta.gz");
+
+  final static File NOTGZALIGN_FILE = new File(
+          "test/jalview/io/test_gz_fasta_notgz.gz");
+
+  final static File STARS_FA_FILE1 = new File(
+          "test/jalview/io/test_fasta_stars.fa");
+
+  final static File STARS_FA_FILE2 = new File(
+          "test/jalview/io/test_fasta_stars2.fa");
 
   private void assertValidFormat(String fmt, String src, FileParse fp)
   {
-    assertTrue("Couldn't resolve "+src+" as a valid file",fp.isValid());
+    assertTrue("Couldn't resolve " + src + " as a valid file", fp.isValid());
     String type = new IdentifyFile().Identify(fp);
-    assertTrue("Data from '"+src+"' Expected to be '"+fmt+"' identified as '"+type+"'",type.equalsIgnoreCase(fmt));
+    assertTrue("Data from '" + src + "' Expected to be '" + fmt
+            + "' identified as '" + type + "'", type.equalsIgnoreCase(fmt));
   }
+
   @Test
   public void testStarsInFasta1() throws IOException
   {
     String uri;
-    FileParse fp = new FileParse(uri=STARS_FA_FILE1.getAbsoluteFile().toString(),AppletFormatAdapter.FILE);
+    FileParse fp = new FileParse(uri = STARS_FA_FILE1.getAbsoluteFile()
+            .toString(), AppletFormatAdapter.FILE);
     assertValidFormat("FASTA", uri, fp);
   }
+
   @Test
   public void testStarsInFasta2() throws IOException
   {
     String uri;
-    FileParse fp = new FileParse(uri=STARS_FA_FILE2.getAbsoluteFile().toString(),AppletFormatAdapter.FILE);
+    FileParse fp = new FileParse(uri = STARS_FA_FILE2.getAbsoluteFile()
+            .toString(), AppletFormatAdapter.FILE);
     assertValidFormat("FASTA", uri, fp);
   }
+
   @Test
   public void testGzipIo() throws IOException
-  {     
+  {
     String uri;
-    FileParse fp = new FileParse(uri=ALIGN_FILE.getAbsoluteFile().toURI().toString(),AppletFormatAdapter.URL);
+    FileParse fp = new FileParse(uri = ALIGN_FILE.getAbsoluteFile().toURI()
+            .toString(), AppletFormatAdapter.URL);
     assertValidFormat("FASTA", uri, fp);
   }
 
@@ -90,21 +105,26 @@ public class FileIOTester
   public void testGziplocalFileIO() throws IOException
   {
     String filepath;
-    FileParse fp = new FileParse(filepath=ALIGN_FILE.getAbsoluteFile().toString(), AppletFormatAdapter.FILE);
-    assertValidFormat("FASTA",filepath, fp);
+    FileParse fp = new FileParse(filepath = ALIGN_FILE.getAbsoluteFile()
+            .toString(), AppletFormatAdapter.FILE);
+    assertValidFormat("FASTA", filepath, fp);
   }
+
   @Test
   public void testNonGzipURLIO() throws IOException
   {
     String uri;
-    FileParse fp = new FileParse(uri=NOTGZALIGN_FILE.getAbsoluteFile().toURI().toString(),AppletFormatAdapter.URL);
-    assertValidFormat("FASTA",uri, fp);
+    FileParse fp = new FileParse(uri = NOTGZALIGN_FILE.getAbsoluteFile()
+            .toURI().toString(), AppletFormatAdapter.URL);
+    assertValidFormat("FASTA", uri, fp);
   }
+
   @Test
   public void testNonGziplocalFileIO() throws IOException
   {
     String filepath;
-    FileParse fp = new FileParse(filepath=NOTGZALIGN_FILE.getAbsoluteFile().toString(), AppletFormatAdapter.FILE);
-    assertValidFormat("FASTA",filepath, fp);
+    FileParse fp = new FileParse(filepath = NOTGZALIGN_FILE
+            .getAbsoluteFile().toString(), AppletFormatAdapter.FILE);
+    assertValidFormat("FASTA", filepath, fp);
   }
 }