import static org.junit.Assert.assertNotNull;
-import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.Annotation;
{
String jsonFile = "examples/example.json";
AppletFormatAdapter rf = new AppletFormatAdapter();
- Alignment al = null;
+ AlignmentI al = null;
try
{
al = rf.readFile(jsonFile, AppletFormatAdapter.FILE,