af.loadJalviewDataFile(inAnnot, DataSourceType.FILE, null, null);
assertSame(af.getViewport().getGlobalColourScheme().getClass(),
TCoffeeColourScheme.class, "Didn't set T-coffee colourscheme");
- assertNotNull(ColourSchemeProperty.getColourScheme(af.getViewport()
+ assertNotNull(
+ ColourSchemeProperty.getColourScheme(af.getViewport(),
+ af.getViewport()
.getAlignment(), af.getViewport().getGlobalColourScheme()
.getSchemeName()), "Recognise T-Coffee score from string");