Merge branch 'develop' into spike/JAL-4047/JAL-4048_columns_in_sequenceID

[jalview.git] / test / jalview / io / NewickFileTests.java

diff --git a/test/jalview/io/NewickFileTests.java b/test/jalview/io/NewickFileTests.java
index 02c5ccd..466f218 100644 (file)
--- a/test/jalview/io/NewickFileTests.java
+++ b/test/jalview/io/NewickFileTests.java
@@ -106,7 +106,7 @@ public class NewickFileTests
       AssertJUnit.assertTrue(
               stage + "Invalid Tree '" + nf.getWarningMessage() + "'",
               nf.isValid());
-      SequenceNode tree = nf.getTree();
+      BinaryNode tree = nf.getTree();
       AssertJUnit.assertTrue(stage + "Null Tree", tree != null);
       stage = "Creating newick file from testTree " + treename;
       String gentree = new NewickFile(tree).print(nf.HasBootstrap(),
@@ -124,7 +124,7 @@ public class NewickFileTests
       AssertJUnit.assertTrue(stage + "Null Tree", tree_regen != null);
       stage = "Compare original and generated tree" + treename;
 
-      Vector<SequenceNode> oseqs, nseqs;
+      Vector<BinaryNode> oseqs, nseqs;
       oseqs = new TreeModel(new SequenceI[0], null, nf)
               .findLeaves(nf.getTree());
       AssertJUnit.assertTrue(stage + "No nodes in original tree.",