JAL-4227 SAM RF00162 round trip test - currently fails

[jalview.git] / test / jalview / io / StockholmFileTest.java

diff --git a/test/jalview/io/StockholmFileTest.java b/test/jalview/io/StockholmFileTest.java
index 10f368a..4a047c7 100644 (file)
--- a/test/jalview/io/StockholmFileTest.java
+++ b/test/jalview/io/StockholmFileTest.java
@@ -62,7 +62,7 @@ public class StockholmFileTest
 
   static String PfamFile = "examples/PF00111_seed.stk",
           RfamFile = "examples/RF00031_folded.stk",
-          RnaSSTestFile = "examples/rna_ss_test.stk";
+          RnaSSTestFile = "examples/rna_ss_test.stk",RnaSS_fromRfamTestFile="examples/RF00162.stk";
 
   @Test(groups = { "Functional" })
   public void pfamFileIO() throws Exception
@@ -723,6 +723,13 @@ public class StockholmFileTest
   {
     roundTripSSForRNA(aliFile, annFileFullWuss);
   }
+  
+  @Test(groups= { "Functional" })
+  public void rfamSS() throws Exception {
+    testFileIOwithFormat(new File(RnaSS_fromRfamTestFile), FileFormat.Stockholm, 2, 1,
+            false, false, false);
+  }
+
 
   @Test(groups = { "Functional" })
   public void detectWussBrackets()