JAL-1295 relaxed test for Annotation element equivalence and javadoc to clarify forma...

[jalview.git] / test / jalview / io / StockholmFileTest.java

diff --git a/test/jalview/io/StockholmFileTest.java b/test/jalview/io/StockholmFileTest.java
index d831b08..a0c9336 100644 (file)
--- a/test/jalview/io/StockholmFileTest.java
+++ b/test/jalview/io/StockholmFileTest.java
@@ -277,9 +277,9 @@ public class StockholmFileTest
       if (an_or != null
               && an_new!= null)
       {
-        if (!an_or.displayCharacter
-                .equals(an_new.displayCharacter)
-                || an_or.secondaryStructure != an_new.secondaryStructure
+        if (!an_or.displayCharacter.trim()
+                .equals(an_new.displayCharacter.trim())
+                || !(""+an_or.secondaryStructure).trim().equals((""+an_new.secondaryStructure).trim())
                 || (an_or.description != an_new.description && (an_or.description == null
                         || an_new.description == null || !an_or.description
                           .equals(an_new.description))))