String toStockholm = af.formatSequences(FileFormat.Stockholm,
new Alignment(new SequenceI[]
{ sq }), false);
- assertTrue(toStockholm.indexOf("P00224") > -1,
+ assertTrue(toStockholm.matches("AC\\s+P00224"),
"Couldn't locate UNIPROT Accession in generated Stockholm file.");
AlignmentI fromStockholm = af.readFile(toStockholm,
DataSourceType.PASTE, FileFormat.Stockholm);