{
AppletFormatAdapter af = new AppletFormatAdapter();
AlignmentI al = af.readFile(PfamFile, af.FILE,
- new IdentifyFile().Identify(PfamFile, af.FILE));
+ new IdentifyFile().identify(PfamFile, af.FILE));
int numpdb = 0;
for (SequenceI sq : al.getSequences())
{
AppletFormatAdapter rf = new AppletFormatAdapter();
AlignmentI al = rf.readFile(ff, AppletFormatAdapter.FILE,
- new IdentifyFile().Identify(ff, AppletFormatAdapter.FILE));
+ new IdentifyFile().identify(ff, AppletFormatAdapter.FILE));
assertNotNull("Couldn't read supplied alignment data.", al);
AppletFormatAdapter.PASTE, ioformat);
assertNotNull("Couldn't parse reimported alignment data.", al_input);
- String identifyoutput = new IdentifyFile().Identify(outputfile,
+ String identifyoutput = new IdentifyFile().identify(outputfile,
AppletFormatAdapter.PASTE);
assertNotNull("Identify routine failed for outputformat " + ioformat,
identifyoutput);