JAL-653 JAL-1968 FeaturesFile now handles Jalview or GFF2 or GFF3

[jalview.git] / test / jalview / io / StockholmFileTest.java

diff --git a/test/jalview/io/StockholmFileTest.java b/test/jalview/io/StockholmFileTest.java
index e889837..d7a9166 100644 (file)
--- a/test/jalview/io/StockholmFileTest.java
+++ b/test/jalview/io/StockholmFileTest.java
@@ -54,7 +54,7 @@ public class StockholmFileTest
   {
     AppletFormatAdapter af = new AppletFormatAdapter();
     AlignmentI al = af.readFile(PfamFile, af.FILE,
-            new IdentifyFile().Identify(PfamFile, af.FILE));
+            new IdentifyFile().identify(PfamFile, af.FILE));
     int numpdb = 0;
     for (SequenceI sq : al.getSequences())
     {
@@ -95,7 +95,7 @@ public class StockholmFileTest
       AppletFormatAdapter rf = new AppletFormatAdapter();
 
       AlignmentI al = rf.readFile(ff, AppletFormatAdapter.FILE,
-              new IdentifyFile().Identify(ff, AppletFormatAdapter.FILE));
+              new IdentifyFile().identify(ff, AppletFormatAdapter.FILE));
 
       assertNotNull("Couldn't read supplied alignment data.", al);
 
@@ -112,7 +112,7 @@ public class StockholmFileTest
               AppletFormatAdapter.PASTE, ioformat);
       assertNotNull("Couldn't parse reimported alignment data.", al_input);
 
-      String identifyoutput = new IdentifyFile().Identify(outputfile,
+      String identifyoutput = new IdentifyFile().identify(outputfile,
               AppletFormatAdapter.PASTE);
       assertNotNull("Identify routine failed for outputformat " + ioformat,
               identifyoutput);