static String PfamFile = "examples/PF00111_seed.stk",
RfamFile = "examples/RF00031_folded.stk";
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void pfamFileIO() throws Exception
{
testFileIOwithFormat(new File(PfamFile), "STH", -1, 0);
}
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void pfamFileDataExtraction() throws Exception
{
AppletFormatAdapter af = new AppletFormatAdapter();
numpdb > 0);
}
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void rfamFileIO() throws Exception
{
testFileIOwithFormat(new File(RfamFile), "STH", 2, 1);
if (naliannot > -1)
{
assertEquals("Number of alignment annotations", naliannot,
- numaliannot);
+ numaliannot);
}
assertTrue(
+ (ignoreFeatures ? " ignoring." : ""),
ignoreFeatures
|| (seq_original[i].getSequenceFeatures() == null && seq_new[in]
- .getSequenceFeatures() == null)
+ .getSequenceFeatures() == null)
|| (seq_original[i].getSequenceFeatures() != null && seq_new[in]
.getSequenceFeatures() != null));
// compare sequence features