Merge branch 'develop' into features/r2_11_2_alphafold/JAL-629

[jalview.git] / test / jalview / project / Jalview2xmlTests.java

diff --git a/test/jalview/project/Jalview2xmlTests.java b/test/jalview/project/Jalview2xmlTests.java
index 13df735..af52eda 100644 (file)
--- a/test/jalview/project/Jalview2xmlTests.java
+++ b/test/jalview/project/Jalview2xmlTests.java
@@ -1571,7 +1571,8 @@ public class Jalview2xmlTests extends Jalview2xmlBase
     float[][] vals = ContactMatrix.fromFloatStringToContacts(content,
             sq.getLength(), sq.getLength());
     assertEquals(vals[3][4], paevals[3][4]);
-
+    dummyMat.makeGroups(0.5f, false);
+    Assert.assertNotSame(dummyMat.getNewick(), "");
     AlignmentAnnotation paeCm = sq.addContactList(dummyMat);
     al.addAnnotation(paeCm);
     File tfile = File.createTempFile("testStoreAndRecoverPAEmatrix",
@@ -1602,6 +1603,10 @@ public class Jalview2xmlTests extends Jalview2xmlBase
         Assert.assertEquals(oldCM.getContactAt(j), newCM.getContactAt(j));
       }
     }
+    Assert.assertEquals(restoredMat.hasGroups(), dummyMat.hasGroups());
+    Assert.assertEquals(restoredMat.getGroups(), dummyMat.getGroups());
+    Assert.assertEquals(restoredMat.hasTree(), dummyMat.hasTree());
+    Assert.assertEquals(restoredMat.getNewick(), dummyMat.getNewick());
 
   }