AlignFrame ref = new FileLoader(false).LoadFileWaitTillLoaded(
"test/jalview/ext/jmol/1QCF.pdb", DataSourceType.FILE);
SequenceI refseq = ref.getViewport().getAlignment().getSequenceAt(0);
- SequenceI newseq = new Sequence(refseq.getName() + "Copy",
+ SequenceI newseq = new Sequence(refseq.getName() + "_Copy",
refseq.getSequenceAsString());
// make it harder by shifting the copy vs the reference
newseq.setStart(refseq.getStart() + 25);