mungo merge

[jalview.git] / test / jalview / structure / StructureSelectionManagerTest.java

diff --git a/test/jalview/structure/StructureSelectionManagerTest.java b/test/jalview/structure/StructureSelectionManagerTest.java
index e9fa336..ddee3ac 100644 (file)
--- a/test/jalview/structure/StructureSelectionManagerTest.java
+++ b/test/jalview/structure/StructureSelectionManagerTest.java
@@ -29,8 +29,8 @@ import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
 import jalview.io.FormatAdapter;
 
-import java.util.HashSet;
-import java.util.Set;
+import java.util.ArrayList;
+import java.util.List;
 
 import org.testng.annotations.BeforeMethod;
 import org.testng.annotations.Test;
@@ -54,21 +54,21 @@ public class StructureSelectionManagerTest
     AlignedCodonFrame acf2 = new AlignedCodonFrame();
 
     ssm.registerMapping(acf1);
-    assertEquals(1, ssm.seqmappings.size());
-    assertTrue(ssm.seqmappings.contains(acf1));
+    assertEquals(1, ssm.getSequenceMappings().size());
+    assertTrue(ssm.getSequenceMappings().contains(acf1));
 
     ssm.registerMapping(acf2);
-    assertEquals(2, ssm.seqmappings.size());
-    assertTrue(ssm.seqmappings.contains(acf1));
-    assertTrue(ssm.seqmappings.contains(acf2));
+    assertEquals(2, ssm.getSequenceMappings().size());
+    assertTrue(ssm.getSequenceMappings().contains(acf1));
+    assertTrue(ssm.getSequenceMappings().contains(acf2));
 
     /*
      * Re-adding the first mapping does nothing
      */
     ssm.registerMapping(acf1);
-    assertEquals(2, ssm.seqmappings.size());
-    assertTrue(ssm.seqmappings.contains(acf1));
-    assertTrue(ssm.seqmappings.contains(acf2));
+    assertEquals(2, ssm.getSequenceMappings().size());
+    assertTrue(ssm.getSequenceMappings().contains(acf1));
+    assertTrue(ssm.getSequenceMappings().contains(acf2));
   }
 
   @Test(groups = { "Functional" })
@@ -78,10 +78,10 @@ public class StructureSelectionManagerTest
     AlignedCodonFrame acf2 = new AlignedCodonFrame();
     AlignedCodonFrame acf3 = new AlignedCodonFrame();
 
-    Set<AlignedCodonFrame> set1 = new HashSet<AlignedCodonFrame>();
+    List<AlignedCodonFrame> set1 = new ArrayList<AlignedCodonFrame>();
     set1.add(acf1);
     set1.add(acf2);
-    Set<AlignedCodonFrame> set2 = new HashSet<AlignedCodonFrame>();
+    List<AlignedCodonFrame> set2 = new ArrayList<AlignedCodonFrame>();
     set2.add(acf2);
     set2.add(acf3);
 
@@ -93,10 +93,10 @@ public class StructureSelectionManagerTest
     ssm.registerMappings(set2);
     ssm.registerMappings(set2);
 
-    assertEquals(3, ssm.seqmappings.size());
-    assertTrue(ssm.seqmappings.contains(acf1));
-    assertTrue(ssm.seqmappings.contains(acf2));
-    assertTrue(ssm.seqmappings.contains(acf3));
+    assertEquals(3, ssm.getSequenceMappings().size());
+    assertTrue(ssm.getSequenceMappings().contains(acf1));
+    assertTrue(ssm.getSequenceMappings().contains(acf2));
+    assertTrue(ssm.getSequenceMappings().contains(acf3));
   }
 
   /**