import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.HiddenColumns;
import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceCollectionI;
import jalview.datamodel.SequenceGroup;
Hashtable<SequenceI, SequenceCollectionI> hiddenRepSequences = new Hashtable<SequenceI, SequenceCollectionI>();
- ColumnSelection hiddenCols = new ColumnSelection();
+ HiddenColumns hiddenCols = new HiddenColumns();
@BeforeClass(alwaysRun = true)
public void setUpJvOptionPane()
{
al.getHiddenSequences().showAll(hiddenRepSequences);
}
- hiddenCols.revealAllHiddenColumns();
+ ColumnSelection colsel = new ColumnSelection();
+ hiddenCols.revealAllHiddenColumns(colsel);
vpranges = new ViewportRanges(al);
vpranges.setStartRes(0);
viewHeight = vpranges.getEndSeq() - vpranges.getStartSeq() + 1;
viewWidth = vpranges.getEndRes() - vpranges.getStartRes() + 1;
- ColumnSelection hiddenCols = new ColumnSelection();
+ HiddenColumns hiddenCols = new HiddenColumns();
od = new OverviewDimensions(vpranges, true);
// Initial box sizing - default path through code