JAL-629 fixing test EBIAlphaFoldTest.checkImportPAEToStructure(). not fixed yet

[jalview.git] / test / jalview / ws / dbsources / EBIAlphaFoldTest.java

diff --git a/test/jalview/ws/dbsources/EBIAlphaFoldTest.java b/test/jalview/ws/dbsources/EBIAlphaFoldTest.java
index b737042..74a149b 100644 (file)
--- a/test/jalview/ws/dbsources/EBIAlphaFoldTest.java
+++ b/test/jalview/ws/dbsources/EBIAlphaFoldTest.java
@@ -12,7 +12,11 @@ import org.testng.annotations.BeforeClass;
 import org.testng.annotations.DataProvider;
 import org.testng.annotations.Test;
 
+import jalview.datamodel.Alignment;
+import jalview.datamodel.AlignmentI;
 import jalview.datamodel.Sequence;
+import jalview.datamodel.SequenceI;
+import jalview.gui.AlignFrame;
 import jalview.gui.Desktop;
 import jalview.gui.JvOptionPane;
 import jalview.structure.StructureMapping;
@@ -62,8 +66,15 @@ public class EBIAlphaFoldTest
       FileAssert.assertFile(new File(paeFile),
               "Test file '" + paeFile + "' doesn't seem to exist");
     }
+    SequenceI seq = new Sequence("Dummy/1-2000",
+            "ASDASDAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA");
+    AlignmentI al = new Alignment(new SequenceI[] { seq });
+    AlignFrame af = new AlignFrame(al, seq.getLength(), 1);
     StructureSelectionManager ssm = StructureSelectionManager
             .getStructureSelectionManager(Desktop.instance);
+    StructureMapping sm = new StructureMapping(seq, pdbFile, null, null,
+            null, null);
+    ssm.addStructureMapping(sm);
 
     StructureMapping[] smArray = ssm.getMapping(pdbFile);
 
@@ -86,8 +97,8 @@ public class EBIAlphaFoldTest
         //
         /*
          */
-        { "examples/test_fab41.result/sample.a2m",
-            "examples/test_fab41.result/test_fab41_predicted_aligned_error_v1.json" },
+        { "examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb",
+            "examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3_scores.json" },
         /*
         { "examples/AlphaFold/AF-A0A1U8FD60-F1-model_v4.pdb",
             "examples/AlphaFold/AF-A0A1U8FD60-F1-predicted_aligned_error_v4.json" },