JAL-3210 Barebones gradle/buildship/eclipse. See README

[jalview.git] / test / jalview / ws / dbsources / XfamFetcherTest.java

diff --git a/test/jalview/ws/dbsources/XfamFetcherTest.java b/test/jalview/ws/dbsources/XfamFetcherTest.java
deleted file mode 100644 (file)
index 51cff6e..0000000
--- a/test/jalview/ws/dbsources/XfamFetcherTest.java
+++ /dev/null
@@ -1,85 +0,0 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *  
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License
- * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- */
-package jalview.ws.dbsources;
-
-import jalview.datamodel.AlignmentI;
-import jalview.gui.JvOptionPane;
-
-import org.testng.Assert;
-import org.testng.annotations.BeforeClass;
-import org.testng.annotations.Test;
-
-public class XfamFetcherTest
-{
-
-  @BeforeClass(alwaysRun = true)
-  public void setUpJvOptionPane()
-  {
-    JvOptionPane.setInteractiveMode(false);
-    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
-  }
-
-  @Test(groups = { "External" })
-  public void testRfamSeed() throws Exception
-  {
-    // RfamFull rff = new RfamFull();
-    RfamSeed rfs = new RfamSeed();
-
-    AlignmentI seedrf = rfs.getSequenceRecords(rfs.getTestQuery());
-    Assert.assertNotNull(seedrf, "Seed Alignment for " + rfs.getTestQuery()
-            + " didn't retrieve.");
-    Assert.assertTrue(seedrf.getHeight() > 1,
-            "Seed Alignment for " + rfs.getTestQuery()
-                    + " didn't contain more than one sequence.");
-    Assert.assertTrue(seedrf.getProperties().size() > 0,
-            "Seed Alignment for " + rfs.getTestQuery()
-                    + " didn't have any properties.");
-
-  }
-
-  @Test(groups = { "External" })
-  public void testPfamFullAndSeed() throws Exception
-  {
-    Pfam pff = new PfamFull();
-    PfamSeed pfseed = new PfamSeed();
-
-    AlignmentI fullpf = pff.getSequenceRecords(pff.getTestQuery());
-    Assert.assertNotNull(fullpf, "Full Alignment for " + pff.getTestQuery()
-            + " didn't retrieve.");
-    Assert.assertTrue(fullpf.getHeight() > 1,
-            "Full Alignment for " + pff.getTestQuery()
-                    + " didn't have more than one sequence.");
-    AlignmentI seedpf = pfseed.getSequenceRecords(pff.getTestQuery());
-    Assert.assertNotNull(seedpf, "Seed Alignment for " + pff.getTestQuery()
-            + " didn't retrieve.");
-    Assert.assertTrue(seedpf.getProperties().size() > 0,
-            "Seed Alignment for " + pfseed.getTestQuery()
-                    + " didn't have any properties.");
-
-    Assert.assertTrue(seedpf.getHeight() < fullpf.getHeight(),
-            "Expected Full alignment to have more sequences than seed for "
-                    + pff.getTestQuery());
-    Assert.assertTrue(fullpf.getProperties().size() > 0,
-            "Full Alignment for " + pff.getTestQuery()
-                    + " didn't have any properties.");
-
-  }
-}