JAL-3438 spotless for 2.11.2.0

[jalview.git] / test / jalview / ws / jabaws / MinJabawsClientTests.java

diff --git a/test/jalview/ws/jabaws/MinJabawsClientTests.java b/test/jalview/ws/jabaws/MinJabawsClientTests.java
index 61f8203..db5f9e4 100644 (file)
--- a/test/jalview/ws/jabaws/MinJabawsClientTests.java
+++ b/test/jalview/ws/jabaws/MinJabawsClientTests.java
@@ -1,11 +1,34 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.ws.jabaws;
 
 import static org.testng.AssertJUnit.assertEquals;
 
+import jalview.gui.JvOptionPane;
+
 import java.util.ArrayList;
 import java.util.List;
 
 import org.testng.Assert;
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
 import compbio.data.msa.MsaWS;
@@ -18,40 +41,60 @@ import compbio.ws.client.Services;
 public class MinJabawsClientTests
 {
 
-       /**
-        * simple test for the benefit of JAL-1338
-        * @throws Exception
-        */
-       @SuppressWarnings("rawtypes")
-  @Test(groups =
-  { "Network" })
-       public void msaTest() throws Exception {
-               String url;
-               RegistryWS registry = Jws2Client
-                               .connectToRegistry(url = "http://www.compbio.dundee.ac.uk/jabaws");
-               if (registry != null) {
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
+  /**
+   * simple test for the benefit of JAL-1338
+   * 
+   * @throws Exception
+   */
+  @SuppressWarnings("rawtypes")
+  @Test(groups = { "Network" })
+  public void msaTest() throws Exception
+  {
+    String url;
+    RegistryWS registry = Jws2Client.connectToRegistry(
+            url = "http://www.compbio.dundee.ac.uk/jabaws");
+    if (registry != null)
+    {
 
-                       MsaWS msaservice = null;
-                       for (Services service : registry.getSupportedServices()) {
-                               if (service.equals(Services.ClustalOWS)) {
-                                       msaservice = (MsaWS) Jws2Client.connect(url, service);
-                                       if (msaservice != null) {
-                                               break;
-                                       }
-                               }
-                       }
-                       if (msaservice == null) {
-                               Assert.fail("couldn't find a clustalO service on the public registry");
-                       }
-                       FastaSequence fsq = new FastaSequence("seqA",
-                                       "SESESESESESESESSESESSESESESESESESESESESEEEEEESSESESESESSSSESESESESESESE");
-                       List<FastaSequence> iseqs = new ArrayList<FastaSequence>();
-                       for (int i = 0; i < 9; i++) {
-                               iseqs.add(new FastaSequence(fsq.getId() + i, fsq.getSequence()
-                                               + fsq.getSequence().substring(i + 3, i + 3 + i)));
-                       }
+      MsaWS msaservice = null;
+      for (Services service : registry.getSupportedServices())
+      {
+        if (service == null)
+        {
+          // the 'unsupported service'
+          continue;
+        }
+        if (service.equals(Services.ClustalOWS))
+        {
+          msaservice = (MsaWS) Jws2Client.connect(url, service);
+          if (msaservice != null)
+          {
+            break;
+          }
+        }
+      }
+      if (msaservice == null)
+      {
+        Assert.fail(
+                "couldn't find a clustalO service on the public registry");
+      }
+      FastaSequence fsq = new FastaSequence("seqA",
+              "SESESESESESESESSESESSESESESESESESESESESEEEEEESSESESESESSSSESESESESESESE");
+      List<FastaSequence> iseqs = new ArrayList<FastaSequence>();
+      for (int i = 0; i < 9; i++)
+      {
+        iseqs.add(new FastaSequence(fsq.getId() + i, fsq.getSequence()
+                + fsq.getSequence().substring(i + 3, i + 3 + i)));
+      }
 
-                       String jobid = msaservice.align(iseqs);
+      String jobid = msaservice.align(iseqs);
       if (jobid != null)
       {
         JobStatus js = null;
@@ -86,8 +129,8 @@ public class MinJabawsClientTests
         // System.out.println(t.getFormattedFasta());
         // }
         // });
-                       }
+      }
 
-               }
-       }
+    }
+  }
 }