JAL-2349 JAL-3855 Integrate pAE retrieval in StructureFile so it can be transferred...

[jalview.git] / test / jalview / ws / seqfetcher / DbRefFetcherTest.java

diff --git a/test/jalview/ws/seqfetcher/DbRefFetcherTest.java b/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
index 6769d39..d2b5aec 100644 (file)
--- a/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
+++ b/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
@@ -20,12 +20,20 @@
  */
 package jalview.ws.seqfetcher;
 
-import static org.testng.Assert.assertNotEquals;
 import static org.testng.AssertJUnit.assertEquals;
 import static org.testng.AssertJUnit.assertFalse;
 import static org.testng.AssertJUnit.assertNotNull;
 import static org.testng.AssertJUnit.assertTrue;
 
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.List;
+
+import org.junit.Assert;
+import org.testng.annotations.AfterClass;
+import org.testng.annotations.BeforeClass;
+import org.testng.annotations.Test;
+
 import jalview.analysis.CrossRef;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
@@ -43,15 +51,6 @@ import jalview.ws.dbsources.EBIAlfaFold;
 import jalview.ws.dbsources.Pdb;
 import jalview.ws.dbsources.Uniprot;
 
-import java.util.ArrayList;
-import java.util.Arrays;
-import java.util.List;
-
-import org.junit.Assert;
-import org.testng.annotations.AfterClass;
-import org.testng.annotations.BeforeClass;
-import org.testng.annotations.Test;
-
 /**
  * @author jimp
  * 
@@ -240,18 +239,21 @@ public class DbRefFetcherTest
   public void testAlphaFoldClien() throws Exception
   {
     DbSourceProxy alphafold = new EBIAlfaFold();
-    AlignmentI resp = alphafold.getSequenceRecords(alphafold.getTestQuery());
+    AlignmentI resp = alphafold
+            .getSequenceRecords(alphafold.getTestQuery());
     assertNotNull(resp);
-    assertEquals("One sequence only",resp.getHeight(), 1);
-    for (AlignmentAnnotation aa:resp.getAlignmentAnnotation()) {
+    assertEquals("One sequence only", resp.getHeight(), 1);
+    for (AlignmentAnnotation aa : resp.getAlignmentAnnotation())
+    {
       if (aa.graph == AlignmentAnnotation.CUSTOMRENDERER)
       {
-        assertTrue("Contact map didn't provide valid contact",resp.getContactListFor(aa, 1).getContactAt(1)!=-1d);
+        assertTrue("Contact map didn't provide valid contact",
+                resp.getContactListFor(aa, 1).getContactAt(1) != -1d);
         // test passes
         return;
       }
     }
-    Assert.fail();
+    Assert.fail("No pAE matrix found for alphafold structure.");
   }
 
 }