import jalview.gui.JvOptionPane;
import jalview.io.DataSourceType;
import jalview.structure.StructureMapping;
+import jalview.structure.StructureMappingClient.StructureMappingException;
import jalview.xml.binding.sifts.Entry.Entity;
import java.io.File;
Assert.assertEquals(actualMapping.get(pair.getKey()),
pair.getValue());
}
-
} catch (Exception e)
{
e.printStackTrace();
@Test(
groups = { "Network" },
- expectedExceptions = SiftsException.class)
+ expectedExceptions = StructureMappingException.class)
private void populateAtomPositionsNullTest1()
- throws IllegalArgumentException, SiftsException
+ throws IllegalArgumentException, StructureMappingException
{
siftsClient.populateAtomPositions(null, null);
}
@Test(
groups = { "Network" },
- expectedExceptions = SiftsException.class)
+ expectedExceptions = StructureMappingException.class)
private void populateAtomPositionsNullTest2()
- throws IllegalArgumentException, SiftsException
+ throws IllegalArgumentException, StructureMappingException
{
siftsClient.populateAtomPositions("A", null);
}
}
@Test(groups = { "Network" })
- public void getSiftsStructureMappingTest() throws SiftsException
+ public void getSiftsStructureMappingTest()
+ throws StructureMappingException, Exception
{
Assert.assertTrue(SiftsSettings.isMapWithSifts());
- StructureMapping strucMapping = siftsClient.getSiftsStructureMapping(
+ StructureMapping strucMapping = siftsClient.getStructureMapping(
testSeq, testPDBId, "A");
String expectedMappingOutput = "\nSequence ⟷ Structure mapping details\n"
+ "Method: SIFTS\n\n"