assertEquals(0, chainA.seqend); // not set
assertEquals(18, chainA.sequence.getStart());
assertEquals(314, chainA.sequence.getEnd());
- assertTrue(chainA.sequence.getSequenceAsString().startsWith("KCSKKQEE"));
+ assertTrue(
+ chainA.sequence.getSequenceAsString().startsWith("KCSKKQEE"));
assertTrue(chainA.sequence.getSequenceAsString().endsWith("WNVEVY"));
assertEquals("3W5V|A", chainA.sequence.getName());
assertNull(chainA.sequence.getAnnotation());
PDBChain chainC = pf.getChains().get(2);
assertEquals(18, chainC.sequence.getStart());
assertEquals(314, chainC.sequence.getEnd());
- assertTrue(chainC.sequence.getSequenceAsString().startsWith("KCSKKQEE"));
+ assertTrue(
+ chainC.sequence.getSequenceAsString().startsWith("KCSKKQEE"));
assertTrue(chainC.sequence.getSequenceAsString().endsWith("WNVEVY"));
assertEquals("3W5V|C", chainC.sequence.getName());
* @throws IOException
*/
@Test(groups = { "Functional" })
- public void testParse_withJmolAddAlignmentAnnotations()
- throws IOException
+ public void testParse_withJmolAddAlignmentAnnotations() throws IOException
{
PDBfile pf = new PDBfile(true, true, false, "examples/3W5V.pdb",
DataSourceType.FILE);
public void setUp()
{
Cache.loadProperties("test/jalview/io/testProps.jvprops");
- Cache.applicationProperties.setProperty("STRUCT_FROM_PDB",
+ Cache.setPropertyNoSave("STRUCT_FROM_PDB",
Boolean.TRUE.toString());
- Cache.applicationProperties.setProperty("ADD_TEMPFACT_ANN",
+ Cache.setPropertyNoSave("ADD_TEMPFACT_ANN",
Boolean.TRUE.toString());
- Cache.applicationProperties.setProperty("ADD_SS_ANN",
+ Cache.setPropertyNoSave("ADD_SS_ANN",
Boolean.TRUE.toString());
StructureImportSettings.setDefaultStructureFileFormat("PDB");
}