Delete JABAWS testing codes

[proteocache.git] / testsrc / compbio / engine / cluster / drmaa / ClusterSessionTester.java

diff --git a/testsrc/compbio/engine/cluster/drmaa/ClusterSessionTester.java b/testsrc/compbio/engine/cluster/drmaa/ClusterSessionTester.java
deleted file mode 100644 (file)
index d72337b..0000000
--- a/testsrc/compbio/engine/cluster/drmaa/ClusterSessionTester.java
+++ /dev/null
@@ -1,96 +0,0 @@
-/* Copyright (c) 2009 Peter Troshin\r
- *  \r
- *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0     \r
- * \r
- *  This library is free software; you can redistribute it and/or modify it under the terms of the\r
- *  Apache License version 2 as published by the Apache Software Foundation\r
- * \r
- *  This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without\r
- *  even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache \r
- *  License for more details.\r
- * \r
- *  A copy of the license is in apache_license.txt. It is also available here:\r
- * @see: http://www.apache.org/licenses/LICENSE-2.0.txt\r
- * \r
- * Any republication or derived work distributed in source code form\r
- * must include this copyright and license notice.\r
- */\r
-\r
-package compbio.engine.cluster.drmaa;\r
-\r
-import static org.testng.Assert.assertEquals;\r
-import static org.testng.Assert.assertFalse;\r
-import static org.testng.Assert.assertTrue;\r
-import static org.testng.Assert.fail;\r
-\r
-import org.testng.annotations.Test;\r
-\r
-import compbio.engine.AsyncExecutor;\r
-import compbio.engine.Configurator;\r
-import compbio.engine.Job;\r
-import compbio.engine.client.ConfiguredExecutable;\r
-import compbio.engine.client.Executable;\r
-import compbio.metadata.AllTestSuit;\r
-import compbio.metadata.JobSubmissionException;\r
-import compbio.metadata.ResultNotAvailableException;\r
-import compbio.runner.msa.ClustalW;\r
-import compbio.util.Util;\r
-\r
-public class ClusterSessionTester {\r
-\r
-       @Test(sequential = true, groups = { AllTestSuit.test_group_cluster,\r
-                       AllTestSuit.test_group_engine })\r
-       public void testTaskList() {\r
-               ClustalW cl = new ClustalW();\r
-\r
-               try {\r
-                       ConfiguredExecutable<ClustalW> clw = Configurator\r
-                                       .configureExecutable(cl, Executable.ExecProvider.Cluster);\r
-                       ClusterRunner jr = ClusterRunner.getInstance(clw);\r
-                       String jobId = jr.submitJob();\r
-                       ClusterSession cs = ClusterSession.getInstance();\r
-                       // this only holds for sequential execution\r
-                       //assertEquals(cs.jobs.size(), 1);\r
-                       assertTrue(Job.getByTaskId(jobId, cs.jobs) != null);\r
-                       assertEquals(Job.getByTaskId(jobId, cs.jobs).getConfExecutable(),\r
-                                       clw);\r
-                       jr.cancelJob(jobId);\r
-                       // this only holds for sequential execution\r
-                       assertEquals(cs.jobs.size(), 0);\r
-\r
-                       clw = Configurator.configureExecutable(cl,\r
-                                       Executable.ExecProvider.Cluster);\r
-                       assertFalse(Util.isEmpty(clw.getWorkDirectory()));\r
-                       AsyncExecutor aengine = Configurator.getAsyncEngine(clw);\r
-                       jobId = aengine.submitJob(clw);\r
-                       assertEquals(cs.jobs.size(), 1);\r
-                       assertTrue(Job.getByTaskId(jobId, cs.jobs) != null);\r
-                       assertEquals(Job.getByTaskId(jobId, cs.jobs).getConfExecutable(),\r
-                                       clw);\r
-                       assertFalse(Util.isEmpty(compbio.engine.Configurator\r
-                                       .getWorkDirectory(jobId)));\r
-                       String workDir = clw.getWorkDirectory();\r
-                       assertEquals(workDir, compbio.engine.Configurator\r
-                                       .getWorkDirectory(jobId));\r
-\r
-                       aengine.getResults(jobId);\r
-                       assertEquals(cs.jobs.size(), 0);\r
-                       assertFalse(Util.isEmpty(clw.getWorkDirectory()));\r
-                       // after job has been removed from the list (e.g when completed)\r
-                       // reference to a work directory can still be obtained by other\r
-                       // means\r
-                       assertFalse(Util.isEmpty(compbio.engine.Configurator\r
-                                       .getWorkDirectory(jobId)));\r
-                       assertEquals(compbio.engine.Configurator.getWorkDirectory(jobId),\r
-                                       workDir);\r
-\r
-               } catch (JobSubmissionException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getMessage());\r
-               } catch (ResultNotAvailableException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getMessage());\r
-               }\r
-       }\r
-\r
-}\r