Add testing dirs

[proteocache.git] / testsrc / compbio / engine / conf / PropertyHelperManagerTester.java

diff --git a/testsrc/compbio/engine/conf/PropertyHelperManagerTester.java b/testsrc/compbio/engine/conf/PropertyHelperManagerTester.java
new file mode 100644 (file)
index 0000000..ab3aa42
--- /dev/null
+++ b/testsrc/compbio/engine/conf/PropertyHelperManagerTester.java
@@ -0,0 +1,116 @@
+/* Copyright (c) 2009 Peter Troshin\r
+ *  \r
+ *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0     \r
+ * \r
+ *  This library is free software; you can redistribute it and/or modify it under the terms of the\r
+ *  Apache License version 2 as published by the Apache Software Foundation\r
+ * \r
+ *  This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without\r
+ *  even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache \r
+ *  License for more details.\r
+ * \r
+ *  A copy of the license is in apache_license.txt. It is also available here:\r
+ * @see: http://www.apache.org/licenses/LICENSE-2.0.txt\r
+ * \r
+ * Any republication or derived work distributed in source code form\r
+ * must include this copyright and license notice.\r
+ */\r
+\r
+package compbio.engine.conf;\r
+\r
+import static org.testng.Assert.assertNotNull;\r
+import static org.testng.Assert.assertTrue;\r
+\r
+import java.io.File;\r
+\r
+import org.testng.annotations.BeforeClass;\r
+import org.testng.annotations.Test;\r
+\r
+import compbio.metadata.AllTestSuit;\r
+import compbio.util.PropertyHelper;\r
+\r
+public class PropertyHelperManagerTester {\r
+\r
+       PropertyHelper ph;\r
+\r
+       @BeforeClass(alwaysRun=true)\r
+       public void testLoadResources() {\r
+               ph = PropertyHelperManager.getPropertyHelper();\r
+               assertNotNull(ph);\r
+       }\r
+\r
+       @Test(groups = AllTestSuit.test_group_cluster)\r
+       public void testClusterEngineConf() {\r
+               // Below are the properties on cluster engine required for its\r
+               // functioning\r
+               validateDirProp("cluster.tmp.directory");\r
+       }\r
+\r
+       void validateDirProp(String propName) {\r
+               assertNotNull(ph);\r
+               assertNotNull(ph.getProperty(propName));\r
+               File tmp = new File(ph.getProperty(propName).trim());\r
+               assertTrue(tmp.exists());\r
+               assertTrue(tmp.isDirectory());\r
+               assertTrue(tmp.canRead());\r
+               assertTrue(tmp.canWrite());\r
+       }\r
+\r
+       void validateExecFileProp(String propName) {\r
+               validateFileProp(propName);\r
+               File tmp = new File(ph.getProperty(propName));\r
+               assertTrue(tmp.canExecute());\r
+       }\r
+\r
+       void validateFileProp(String propName) {\r
+               assertNotNull(ph.getProperty(propName));\r
+               File tmp = new File(ph.getProperty(propName));\r
+               assertTrue(tmp.exists());\r
+               assertTrue(tmp.isFile());\r
+               assertTrue(tmp.canRead());\r
+       }\r
+\r
+       @Test\r
+       public void validateClustalConfiguration() {\r
+               // Below are the properties on Clustal executable required for its\r
+               // functioning\r
+               // Executables could not be verified as full path is constructed only at\r
+               // runtime\r
+               assertNotNull("local.clustalw.bin.windows");\r
+               assertNotNull("local.clustalw.bin");\r
+               assertNotNull("cluster.clustalw.bin");\r
+               validateFileProp("clustalw.presets.file");\r
+               validateFileProp("clustalw.parameters.file");\r
+               //validateFileProp("clustalw.limits.file");\r
+       }\r
+\r
+       @Test\r
+       public void validateMuscleConfiguration() {\r
+               assertNotNull("local.muscle.bin.windows");\r
+               assertNotNull("local.muscle.bin");\r
+               assertNotNull("cluster.muscle.bin");\r
+               validateFileProp("muscle.presets.file");\r
+               validateFileProp("muscle.parameters.file");\r
+               //validateFileProp("muscle.limits.file");\r
+       }\r
+\r
+       @Test\r
+       public void validateTcoffeeConfiguration() {\r
+               assertNotNull("local.tcoffee.bin.windows");\r
+               assertNotNull("local.tcoffee.bin");\r
+               assertNotNull("cluster.tcoffee.bin");\r
+               validateFileProp("tcoffee.presets.file");\r
+               validateFileProp("tcoffee.parameters.file");\r
+               //validateFileProp("tcoffee.limits.file");\r
+       }\r
+\r
+       @Test\r
+       public void validateMafftConfiguration() {\r
+               assertNotNull("local.mafft.bin.windows");\r
+               assertNotNull("local.mafft.bin");\r
+               assertNotNull("cluster.mafft.bin");\r
+               validateFileProp("mafft.presets.file");\r
+               validateFileProp("mafft.parameters.file");\r
+               //validateFileProp("mafft.limits.file");\r
+       }\r
+}\r