Delete JABAWS testing codes

[proteocache.git] / testsrc / compbio / ws / client / TestIUPredWS.java

diff --git a/testsrc/compbio/ws/client/TestIUPredWS.java b/testsrc/compbio/ws/client/TestIUPredWS.java
deleted file mode 100644 (file)
index 158b9ae..0000000
--- a/testsrc/compbio/ws/client/TestIUPredWS.java
+++ /dev/null
@@ -1,104 +0,0 @@
-package compbio.ws.client;
-
-import static org.testng.Assert.assertEquals;
-import static org.testng.Assert.assertNotNull;
-import static org.testng.Assert.fail;
-
-import java.io.File;
-import java.io.FileInputStream;
-import java.io.FileNotFoundException;
-import java.io.IOException;
-import java.net.ConnectException;
-import java.util.ArrayList;
-import java.util.List;
-
-import javax.xml.ws.WebServiceException;
-
-import org.testng.annotations.BeforeTest;
-import org.testng.annotations.Test;
-
-import compbio.data.msa.JABAService;
-import compbio.data.msa.SequenceAnnotation;
-import compbio.data.sequence.ConservationMethod;
-import compbio.data.sequence.FastaSequence;
-import compbio.data.sequence.ScoreManager;
-import compbio.data.sequence.SequenceUtil;
-import compbio.metadata.AllTestSuit;
-import compbio.metadata.JobSubmissionException;
-import compbio.metadata.LimitExceededException;
-import compbio.metadata.Option;
-import compbio.metadata.PresetManager;
-import compbio.metadata.ResultNotAvailableException;
-import compbio.metadata.RunnerConfig;
-import compbio.metadata.UnsupportedRuntimeException;
-import compbio.metadata.WrongParameterException;
-import compbio.runner.conservation.AACon;
-import compbio.util.SysPrefs;
-import compbio.ws.server.IUPredWS;
-
-public class TestIUPredWS {
-
-       SequenceAnnotation<IUPredWS> msaws;
-
-       @BeforeTest(groups = {AllTestSuit.test_group_webservices})
-       void initConnection() {
-               /*
-                * URL url = null; try { url = new
-                * URL("http://localhost:8080/jabaws/AAConWS?wsdl"); } catch
-                * (MalformedURLException e) { e.printStackTrace();
-                * fail(e.getLocalizedMessage()); } String namespace =
-                * "http://msa.data.compbio/01/12/2010/"; QName qname = new
-                * QName(namespace, "AAConWS"); Service serv = Service.create(url,
-                * qname); msaws = serv.getPort(new QName(namespace, "AAConWSPort"),
-                * Annotation.class);
-                */try {
-                       JABAService client = Jws2Client.connect(
-                                       "http://localhost:8080/jabaws", Services.IUPredWS);
-                       msaws = (SequenceAnnotation<IUPredWS>) client;
-               } catch (ConnectException e) {
-                       e.printStackTrace();
-                       fail(e.getMessage());
-               } catch (WebServiceException e) {
-                       e.printStackTrace();
-                       fail(e.getMessage());
-               }
-       }
-
-       @Test(groups = {AllTestSuit.test_group_webservices})
-       public void testCustomAnalize() throws FileNotFoundException, IOException {
-
-               String CURRENT_DIRECTORY = SysPrefs.getCurrentDirectory()
-                               + File.separator;
-
-               List<FastaSequence> fsl = SequenceUtil.readFasta(new FileInputStream(
-                               CURRENT_DIRECTORY + "testsrc" + File.separator + "testdata"
-                                               + File.separator + "TO1381.fasta"));
-
-               try {
-                       List<Option<IUPredWS>> opts=new ArrayList<Option<IUPredWS>>();
-                       opts.add(msaws.getRunnerOptions().getArgumentByOptionName("Long"));
-                       String jobId = msaws.customAnalize(fsl,opts);
-                       System.out.println("J: " + jobId);
-                       ScoreManager result = msaws.getAnnotation(jobId);
-                       assertNotNull(result);
-//                     assertEquals(result.asSet().size(), 1);
-
-               } catch (UnsupportedRuntimeException e) {
-                       e.printStackTrace();
-                       fail(e.getMessage());
-               } catch (LimitExceededException e) {
-                       e.printStackTrace();
-                       fail(e.getMessage());
-               } catch (JobSubmissionException e) {
-                       e.printStackTrace();
-                       fail(e.getMessage());
-               } catch (ResultNotAvailableException e) {
-                       e.printStackTrace();
-                       fail(e.getMessage());
-               } catch (WrongParameterException e) {
-                       e.printStackTrace();
-                       fail(e.getMessage());
-               }
-
-       }
-}