Delete JABAWS testing codes

[proteocache.git] / testsrc / compbio / ws / client / TestRNAalifoldWS.java

diff --git a/testsrc/compbio/ws/client/TestRNAalifoldWS.java b/testsrc/compbio/ws/client/TestRNAalifoldWS.java
deleted file mode 100644 (file)
index cafe9cb..0000000
--- a/testsrc/compbio/ws/client/TestRNAalifoldWS.java
+++ /dev/null
@@ -1,106 +0,0 @@
-       package compbio.ws.client;
-
-import static org.testng.Assert.assertNotNull;
-import static org.testng.Assert.fail;
-
-import java.io.FileInputStream;
-import java.io.FileNotFoundException;
-import java.io.IOException;
-import java.io.OutputStreamWriter;
-import java.io.Writer;
-import java.net.ConnectException;
-import java.util.ArrayList;
-import java.util.List;
-
-import javax.xml.ws.WebServiceException;
-
-import org.testng.annotations.BeforeTest;
-import org.testng.annotations.Test;
-
-import compbio.data.msa.JABAService;
-import compbio.data.msa.SequenceAnnotation;
-import compbio.data.sequence.Alignment;
-import compbio.data.sequence.ClustalAlignmentUtil;
-import compbio.data.sequence.FastaSequence;
-import compbio.data.sequence.RNAStructScoreManager;
-import compbio.data.sequence.UnknownFileFormatException;
-import compbio.metadata.AllTestSuit;
-import compbio.metadata.JobSubmissionException;
-import compbio.metadata.LimitExceededException;
-import compbio.metadata.Option;
-import compbio.metadata.ResultNotAvailableException;
-import compbio.metadata.UnsupportedRuntimeException;
-import compbio.metadata.WrongParameterException;
-import compbio.ws.server.RNAalifoldWS;
-
-
-public class TestRNAalifoldWS {
-       
-       SequenceAnnotation<RNAalifoldWS> foldws;
-//     RNAalifoldWS foldws;
-       
-       @BeforeTest(groups = {AllTestSuit.test_group_webservices})
-       void initConnection() {
-               
-               try {
-                       JABAService client = Jws2Client.connect(
-                                       "http://localhost:8080/jabaws", Services.RNAalifoldWS);
-//                     foldws = (RNAalifoldWS) client;
-                       foldws = (SequenceAnnotation<RNAalifoldWS>) client;
-               } catch (ConnectException e) {
-                       e.printStackTrace();
-                       fail(e.getMessage());
-               } catch (WebServiceException e) {
-                       e.printStackTrace();
-                       fail(e.getMessage());
-               }
-       }
-
-       
-       @Test(groups = {AllTestSuit.test_group_webservices})
-       public void testFold() throws FileNotFoundException, IOException,
-                       UnknownFileFormatException {
-               
-               Alignment aln = ClustalAlignmentUtil.readClustalFile(new FileInputStream(
-                               AllTestSuit.test_input_aln));
-               
-               List<FastaSequence> fsl = aln.getSequences();
-               
-               try {
-                       List<Option<RNAalifoldWS>> options  = new ArrayList<Option<RNAalifoldWS>>();
-                       options.add(foldws.getRunnerOptions().getArgumentByOptionName("--mis"));
-                       options.add(foldws.getRunnerOptions().getArgumentByOptionName("-p"));
-                       options.add(foldws.getRunnerOptions().getArgumentByOptionName("--MEA"));
-                       
-                       System.out.println("TestRNAalifoldWS: print options: " + options.toString());
-                       
-                       String jobId = foldws.customAnalize(fsl, options);
-                       System.out.println("J: " + jobId);
-                       RNAStructScoreManager result = (RNAStructScoreManager)foldws.getAnnotation(jobId);
-
-                       Writer writer = new OutputStreamWriter(System.out);
-                       result.writeOut(writer);
-                       
-                       assertNotNull(result);
-                       
-               } catch (UnsupportedRuntimeException e) {
-                       e.printStackTrace();
-                       fail(e.getMessage());
-               } catch (LimitExceededException e) {
-                       e.printStackTrace();
-                       fail(e.getMessage());
-               } catch (JobSubmissionException e) {
-                       e.printStackTrace();
-                       fail(e.getMessage());
-               } catch (ResultNotAvailableException e) {
-                       e.printStackTrace();
-                       fail(e.getMessage());
-               } catch (WrongParameterException e) {
-                       e.printStackTrace();
-                       fail(e.getMessage());
-               }
-       }
-}
-       
-
-