Delete JABAWS testing codes

[proteocache.git] / testsrc / compbio / ws / server / RegistryWSTester.java

diff --git a/testsrc/compbio/ws/server/RegistryWSTester.java b/testsrc/compbio/ws/server/RegistryWSTester.java
deleted file mode 100644 (file)
index 34f7b6c..0000000
--- a/testsrc/compbio/ws/server/RegistryWSTester.java
+++ /dev/null
@@ -1,222 +0,0 @@
-package compbio.ws.server;\r
-\r
-import static org.testng.Assert.assertNotNull;\r
-import static org.testng.Assert.assertTrue;\r
-import static org.testng.Assert.fail;\r
-\r
-import java.io.File;\r
-import java.io.FileInputStream;\r
-import java.io.FileNotFoundException;\r
-import java.io.IOException;\r
-import java.net.ConnectException;\r
-import java.util.Arrays;\r
-import java.util.List;\r
-import java.util.Set;\r
-\r
-import javax.xml.ws.WebServiceException;\r
-\r
-import org.testng.annotations.Test;\r
-\r
-import compbio.data.msa.MsaWS;\r
-import compbio.data.sequence.FastaSequence;\r
-import compbio.data.sequence.SequenceUtil;\r
-import compbio.metadata.AllTestSuit;\r
-import compbio.metadata.ChunkHolder;\r
-import compbio.metadata.JobStatus;\r
-import compbio.metadata.JobSubmissionException;\r
-import compbio.metadata.ResultNotAvailableException;\r
-import compbio.ws.client.Jws2Client;\r
-import compbio.ws.client.Services;\r
-import compbio.ws.client.WSTesterTester;\r
-\r
-public class RegistryWSTester {\r
-\r
-       @Test(groups = {AllTestSuit.test_group_webservices,\r
-                       AllTestSuit.test_group_windows_only})\r
-       public void testGetSupportedServices() {\r
-               try {\r
-                       compbio.data.msa.RegistryWS reg = Jws2Client\r
-                                       .connectToRegistry(WSTesterTester.SERVER);\r
-                       System.out.println(reg.getSupportedServices());\r
-                       Set<Services> supserv = reg.getSupportedServices();\r
-                       assertTrue(supserv.containsAll(Arrays.asList(new Services[]{\r
-                                       Services.AAConWS, Services.ClustalOWS, Services.IUPredWS,\r
-                                       Services.MuscleWS, Services.ClustalWS, Services.JronnWS})));\r
-               } catch (ConnectException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               } catch (WebServiceException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               }\r
-       }\r
-       @Test(groups = {AllTestSuit.test_group_webservices})\r
-       public void testTestService() {\r
-               compbio.data.msa.RegistryWS reg = null;\r
-               try {\r
-                       reg = Jws2Client.connectToRegistry(WSTesterTester.SERVER);\r
-                       assertNotNull(reg.testService(Services.AAConWS));\r
-               } catch (ConnectException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               } catch (WebServiceException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               }\r
-       }\r
-\r
-       @Test(dependsOnMethods = {"testTestService"}, groups = {AllTestSuit.test_group_webservices})\r
-       public void testIsOperating() {\r
-               try {\r
-                       compbio.data.msa.RegistryWS reg = Jws2Client\r
-                                       .connectToRegistry(WSTesterTester.SERVER);\r
-                       assertTrue(reg.isOperating(Services.AAConWS));\r
-               } catch (ConnectException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               } catch (WebServiceException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               }\r
-       }\r
-\r
-       @Test(dependsOnMethods = {"testTestService"}, groups = {AllTestSuit.test_group_webservices})\r
-       public void testGetLastTestedOn() {\r
-               try {\r
-                       compbio.data.msa.RegistryWS reg = Jws2Client\r
-                                       .connectToRegistry(WSTesterTester.SERVER);\r
-                       assertNotNull(reg.getLastTestedOn(Services.AAConWS));\r
-               } catch (ConnectException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               } catch (WebServiceException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               }\r
-       }\r
-\r
-       @Test(dependsOnMethods = {"testTestService"}, groups = {AllTestSuit.test_group_webservices})\r
-       public void testGetLastTested() {\r
-               try {\r
-                       Thread.sleep(1000);\r
-               } catch (InterruptedException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getMessage());\r
-               }\r
-               try {\r
-                       compbio.data.msa.RegistryWS reg = Jws2Client\r
-                                       .connectToRegistry(WSTesterTester.SERVER);\r
-                       System.out.println(reg.getLastTested(Services.AAConWS));\r
-                       assertTrue(reg.getLastTested(Services.AAConWS) > 0);\r
-               } catch (ConnectException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               } catch (WebServiceException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               }\r
-       }\r
-\r
-       @Test(groups = {AllTestSuit.test_group_webservices})\r
-       public void testTestAllServices() {\r
-               try {\r
-                       compbio.data.msa.RegistryWS reg = Jws2Client\r
-                                       .connectToRegistry(WSTesterTester.SERVER);\r
-                       System.out.println(reg.testAllServices());\r
-               } catch (ConnectException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               } catch (WebServiceException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               }\r
-       }\r
-\r
-       @Test(groups = {AllTestSuit.test_group_webservices})\r
-       public void testProgressReporting() {\r
-               MsaWS service = null;\r
-               try {\r
-                       service = (MsaWS) Jws2Client.connect(\r
-                                       "http://www.compbio.dundee.ac.uk/jabaws",\r
-                                       // "http://webserv1.cluster.lifesci.dundee.ac.uk:8089/jabaws",\r
-                                       Services.ProbconsWS);\r
-                       File input = new File(AllTestSuit.TEST_DATA_PATH_ABSOLUTE\r
-                                       + "200x500Protein.fasta");\r
-                       assertTrue(input.exists());\r
-                       List<FastaSequence> fs = SequenceUtil\r
-                                       .readFasta(new FileInputStream(input));\r
-                       String jobId = service.align(fs);\r
-                       Thread.sleep(5000);\r
-                       ChunkHolder pos = null;\r
-                       while (service.getJobStatus(jobId) == JobStatus.RUNNING) {\r
-                               if (pos == null) {\r
-                                       pos = service.pullExecStatistics(jobId, 0);\r
-                               } else {\r
-                                       pos = service.pullExecStatistics(jobId,\r
-                                                       pos.getNextPosition());\r
-                               }\r
-                               Thread.sleep(10);\r
-                               System.out.print(pos.getChunk());\r
-                       }\r
-                       System.out.println();\r
-                       System.out.println(service.getResult(jobId));\r
-               } catch (ConnectException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               } catch (WebServiceException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               } catch (ResultNotAvailableException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               } catch (FileNotFoundException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               } catch (IOException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               } catch (JobSubmissionException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               } catch (InterruptedException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               }\r
-       }\r
-\r
-       @Test(groups = {AllTestSuit.test_group_webservices})\r
-       public void testPullRunningJob() {\r
-               MsaWS service = null;\r
-               try {\r
-                       service = (MsaWS) Jws2Client.connect(\r
-                                       "http://webserv1.cluster.lifesci.dundee.ac.uk:8089/jabaws",\r
-                                       Services.ProbconsWS);\r
-                       String jobId = "@Probcons#158079030012566";\r
-                       ChunkHolder pos = null;\r
-                       while (service.getJobStatus(jobId) == JobStatus.RUNNING) {\r
-                               if (pos == null) {\r
-                                       pos = service.pullExecStatistics(jobId, 0);\r
-                               } else {\r
-                                       pos = service.pullExecStatistics(jobId,\r
-                                                       pos.getNextPosition());\r
-                               }\r
-                               Thread.sleep(10);\r
-                               System.out.print(pos.getChunk());\r
-                       }\r
-                       System.out.println();\r
-                       System.out.println(service.getResult(jobId));\r
-               } catch (ConnectException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               } catch (WebServiceException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               } catch (ResultNotAvailableException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               } catch (InterruptedException e) {\r
-                       e.printStackTrace();\r
-                       fail(e.getLocalizedMessage());\r
-               }\r
-       }\r
-}\r