Add testing dirs

[proteocache.git] / testsrc / testdata / MuscleLimits.xml

diff --git a/testsrc/testdata/MuscleLimits.xml b/testsrc/testdata/MuscleLimits.xml
new file mode 100644 (file)
index 0000000..2aceb46
--- /dev/null
+++ b/testsrc/testdata/MuscleLimits.xml
@@ -0,0 +1,33 @@
+<?xml version="1.0" encoding="US-ASCII" standalone="yes"?>\r
+<limits>\r
+ <runnerClassName>compbio.runner.muscle.Muscle</runnerClassName>\r
+       <limit isDefault="true">\r
+               <seqNumber>100000</seqNumber>\r
+               <seqLength>100000</seqLength>\r
+       </limit>\r
+       <limit isDefault="false">\r
+               <preset># LocalEngineExecutionLimit #</preset>\r
+               <seqNumber>100000</seqNumber>\r
+               <seqLength>100000</seqLength>\r
+       </limit>\r
+       \r
+       <!-- Uncomment/edit these if you would like to have separate limits for presets -->\r
+       <!-- \r
+       <limit isDefault="false">\r
+               <preset>Protein alignment(Fastest speed)</preset>\r
+               <seqNumber>2000</seqNumber>\r
+               <seqLength>1000</seqLength>\r
+       </limit>\r
+       <limit isDefault="false">\r
+               <preset>Nucleotide alignment(Fastest speed)</preset>\r
+               <seqNumber>1000</seqNumber>\r
+               <seqLength>3000</seqLength>\r
+       </limit>\r
+       <limit isDefault="false">\r
+               <preset>Huge alignments (speed-oriented)</preset>\r
+               <seqNumber>2000</seqNumber>\r
+               <seqLength>3000</seqLength>\r
+       </limit>\r
+        -->\r
+        \r
+</limits>\r