Add testing dirs

[proteocache.git] / testsrc / testdata / TO1381L.aln

diff --git a/testsrc/testdata/TO1381L.aln b/testsrc/testdata/TO1381L.aln
new file mode 100644 (file)
index 0000000..17da38d
--- /dev/null
+++ b/testsrc/testdata/TO1381L.aln
@@ -0,0 +1,62 @@
+CLUSTAL 2.0.12 multiple sequence alignment\r
+\r
+\r
+Foobar_dundeefriendsa-sdfkjslk      MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL\r
+Foobar                              -----------------------------------MGDTTAGEMAVQRGL\r
+dundeefriendssdfsdfjsadflkajds      -MTADGPRELLQLRAAVRHRPQDVAWLMLADAELGMGDTTAGEMAVQRGL\r
+                                                                       ***************\r
+\r
+Foobar_dundeefriendsa-sdfkjslk      ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA\r
+Foobar                              ALH----------------QQRHAEAAVLLQQASDAAPEHPGIALWL-HA\r
+dundeefriendssdfsdfjsadflkajds      ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA\r
+                                    ***                **************************** **\r
+\r
+Foobar_dundeefriendsa-sdfkjslk      LEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ\r
+Foobar                              LEDAGQAEAAAA-YTRAHQLLPEEPYITAQLLN-----------------\r
+dundeefriendssdfsdfjsadflkajds      LED--------------HQLLPEEPYITAQLDVLSAQVR-----------\r
+                                    ***              **************                   \r
+\r
+Foobar_dundeefriendsa-sdfkjslk      VRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAPTRV\r
+Foobar                              ---AVAQGVGAVEPFAFLSEDASAAE--------------SVRPLAPTRV\r
+dundeefriendssdfsdfjsadflkajds      --AAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAPTRV\r
+                                       ***********************              **********\r
+\r
+Foobar_dundeefriendsa-sdfkjslk      RSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDG\r
+Foobar                              RSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDG\r
+dundeefriendssdfsdfjsadflkajds      RSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDG\r
+                                    **************************************************\r
+\r
+Foobar_dundeefriendsa-sdfkjslk      STLRTRLAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEV\r
+Foobar                              STLRTRLAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEV\r
+dundeefriendssdfsdfjsadflkajds      STLRTRLAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEV\r
+                                    **************************************************\r
+\r
+Foobar_dundeefriendsa-sdfkjslk      FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQ\r
+Foobar                              FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQ\r
+dundeefriendssdfsdfjsadflkajds      FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQ\r
+                                    **************************************************\r
+\r
+Foobar_dundeefriendsa-sdfkjslk      GAFQPSDTSRVVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAV\r
+Foobar                              GAFQPSDTSRVVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAV\r
+dundeefriendssdfsdfjsadflkajds      GAFQPSDTSRVVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAV\r
+                                    **************************************************\r
+\r
+Foobar_dundeefriendsa-sdfkjslk      LREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLAR\r
+Foobar                              LREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLAR\r
+dundeefriendssdfsdfjsadflkajds      LREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLAR\r
+                                    **************************************************\r
+\r
+Foobar_dundeefriendsa-sdfkjslk      YRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLG\r
+Foobar                              YRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLG\r
+dundeefriendssdfsdfjsadflkajds      YRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLG\r
+                                    **************************************************\r
+\r
+Foobar_dundeefriendsa-sdfkjslk      LDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRESGVFEMDGFAD\r
+Foobar                              LDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRESGVFEMDGFAD\r
+dundeefriendssdfsdfjsadflkajds      LDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRESI---------\r
+                                    ****************************************          \r
+\r
+Foobar_dundeefriendsa-sdfkjslk      DFGALLQALARRHGWLGI\r
+Foobar                              DFGALLQALARRHGWLGI\r
+dundeefriendssdfsdfjsadflkajds      ------------------\r
+                                                      \r