Add testing dirs

[proteocache.git] / testsrc / testdata / TO1381s.aln

diff --git a/testsrc/testdata/TO1381s.aln b/testsrc/testdata/TO1381s.aln
new file mode 100644 (file)
index 0000000..9548752
--- /dev/null
+++ b/testsrc/testdata/TO1381s.aln
@@ -0,0 +1,52 @@
+CLUSTAL 2.0.12 multiple sequence alignment\r
+\r
+\r
+Foo             MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV\r
+Fb              -----------------------------------MGDTTAGEMAVQRGLALH-------\r
+de              -MTADGPRELLQLRAAVRHRPQDVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV\r
+                                                   ******************       \r
+\r
+Foo             ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL\r
+Fb              ---------QQRHAEAAVLLQQASDAAPEHPGIALWL-HALEDAGQAEAAAA-YTRAHQL\r
+de              ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED--------------HQL\r
+                         **************************** *****              ***\r
+\r
+Foo             LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLAC\r
+Fb              LPEEPYITAQLLN--------------------AVAQGVGAVEPFAFLSEDASAAE----\r
+de              LPEEPYITAQLDVLSAQVR-------------AAVAQGVGAVEPFAFLSEDASAAEQLAC\r
+                ***********                      ***********************    \r
+\r
+Foo             ARTRAQAIAASVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQM\r
+Fb              ----------SVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQM\r
+de              ARTRAQAIAASVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQM\r
+                          **************************************************\r
+\r
+Foo             HLFATSGDDGSTLRTRLAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEV\r
+Fb              HLFATSGDDGSTLRTRLAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEV\r
+de              HLFATSGDDGSTLRTRLAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEV\r
+                ************************************************************\r
+\r
+Foo             FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSR\r
+Fb              FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSR\r
+de              FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSR\r
+                ************************************************************\r
+\r
+Foo             VVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA\r
+Fb              VVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA\r
+de              VVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA\r
+                ************************************************************\r
+\r
+Foo             RLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVL\r
+Fb              RLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVL\r
+de              RLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVL\r
+                ************************************************************\r
+\r
+Foo             TTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRES\r
+Fb              TTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRES\r
+de              TTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRES\r
+                ************************************************************\r
+\r
+Foo             GVFEMDGFADDFGALLQALARRHGWLGI\r
+Fb              GVFEMDGFADDFGALLQALARRHGWLGI\r
+de              I---------------------------\r
+                                            \r