Merge branch 'develop' into features/JAL-4219_extended_fasta_rna_ss

[jalview.git] / utils / install4j / auto_file_associations-i4j10.pl

diff --git a/utils/install4j/auto_file_associations-i4j10.pl b/utils/install4j/auto_file_associations-i4j10.pl
index f7e17a1..96aee95 100755 (executable)
--- a/utils/install4j/auto_file_associations-i4j10.pl
+++ b/utils/install4j/auto_file_associations-i4j10.pl
@@ -30,7 +30,9 @@ my $mimetypes = {
 };
 
 my @dontaddshortname = qw(features json);
-my @dontaddextension = qw(html xml json jar mfa fastq);
+# mfa and fastq not properly supported in Jalview (but enough to be in the application extensions)
+# ENA flatfile extension txt is too generic, as well as html xml json jar
+my @dontaddextension = qw(txt html xml json jar mfa fastq);
 my $add_associations = {
   biojson => {shortname=>"biojson",name=>"BioJSON",extensions=>["biojson"]},
   gff2 => {shortname=>"gff2",name=>"Generic Features Format v2",extensions=>["gff2"]},
@@ -49,7 +51,7 @@ my $add_extensions = {
 my @put_first = qw(jalview jvl);
 my @owner = @put_first;
 
-my @non_primary = qw(mmcif mmcif2 pdb);
+my @non_primary = qw(mmcif mmcif2 pdb txt);
 
 my $v = ($i4jversion >= 8)?$i4jversion:"";
 my $i4jtemplatefile = "file_associations_template-install4j${v}.xml";