JAL-3210 Bringing in improvements to build.gradle

[jalview.git] / utils / install4j / file_associations_auto-Info_plist.xml

diff --git a/utils/install4j/file_associations_auto-Info_plist.xml b/utils/install4j/file_associations_auto-Info_plist.xml
index f799885..67f5ba0 100644 (file)
--- a/utils/install4j/file_associations_auto-Info_plist.xml
+++ b/utils/install4j/file_associations_auto-Info_plist.xml
@@ -4,20 +4,17 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
-<string>fa</string>
-<string>fasta</string>
-<string>mfa</string>
-<string>fastq</string>
+<string>jvp</string>
 </array>
 <key>CFBundleTypeName</key>
-<string>Fasta File</string>
+<string>Jalview File</string>
 <key>CFBundleTypeIconFile</key>
 <string>Jalview-File.icns</string>
 <key>CFBundleTypeRole</key>
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>application/x-jalview-fasta</string>
+<string>application/x-jalview+xml+zip</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -26,17 +23,95 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
-<string>pfam</string>
+<string>jvl</string>
 </array>
 <key>CFBundleTypeName</key>
-<string>PFAM File</string>
+<string>Jalview Launch File</string>
+<key>CFBundleTypeIconFile</key>
+<string>Jalview-Launch.icns</string>
+<key>CFBundleTypeRole</key>
+<string>Editor</string>
+<key>CFBundleTypeMIMETypes</key>
+<array>
+<string>application/x-jalview-jvl+text</string>
+</array>
+<key>LSIsAppleDefaultForType</key>
+<true/>
+</dict>
+
+<dict>
+<key>CFBundleTypeExtensions</key>
+<array>
+<string>cif</string>
+</array>
+<key>CFBundleTypeName</key>
+<string>mmCIF File</string>
+<key>CFBundleTypeIconFile</key>
+<string>Jalview-File.icns</string>
+<key>CFBundleTypeRole</key>
+<string>Viewer</string>
+<key>CFBundleTypeMIMETypes</key>
+<array>
+<string>chemical/x-cif</string>
+</array>
+<key>LSIsAppleDefaultForType</key>
+<false/>
+</dict>
+
+<dict>
+<key>CFBundleTypeExtensions</key>
+<array>
+<string>mcif</string>
+<string>mmcif</string>
+</array>
+<key>CFBundleTypeName</key>
+<string>mmCIF File</string>
+<key>CFBundleTypeIconFile</key>
+<string>Jalview-File.icns</string>
+<key>CFBundleTypeRole</key>
+<string>Viewer</string>
+<key>CFBundleTypeMIMETypes</key>
+<array>
+<string>chemical/x-mcif</string>
+</array>
+<key>LSIsAppleDefaultForType</key>
+<false/>
+</dict>
+
+<dict>
+<key>CFBundleTypeExtensions</key>
+<array>
+<string>pdb</string>
+<string>ent</string>
+</array>
+<key>CFBundleTypeName</key>
+<string>PDB File</string>
+<key>CFBundleTypeIconFile</key>
+<string>Jalview-File.icns</string>
+<key>CFBundleTypeRole</key>
+<string>Viewer</string>
+<key>CFBundleTypeMIMETypes</key>
+<array>
+<string>chemical/x-pdb</string>
+</array>
+<key>LSIsAppleDefaultForType</key>
+<false/>
+</dict>
+
+<dict>
+<key>CFBundleTypeExtensions</key>
+<array>
+<string>amsa</string>
+</array>
+<key>CFBundleTypeName</key>
+<string>AMSA File</string>
 <key>CFBundleTypeIconFile</key>
 <string>Jalview-File.icns</string>
 <key>CFBundleTypeRole</key>
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>application/x-jalview-pfam</string>
+<string>application/x-amsa+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -45,18 +120,18 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
-<string>sto</string>
-<string>stk</string>
+<string>annotations</string>
+<string>jvannotations</string>
 </array>
 <key>CFBundleTypeName</key>
-<string>Stockholm File</string>
+<string>Jalview Annotations File</string>
 <key>CFBundleTypeIconFile</key>
 <string>Jalview-File.icns</string>
 <key>CFBundleTypeRole</key>
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>application/x-jalview-stockholm</string>
+<string>application/x-jalview-annotations+text</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -65,17 +140,17 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
-<string>pir</string>
+<string>biojson</string>
 </array>
 <key>CFBundleTypeName</key>
-<string>PIR File</string>
+<string>BioJSON File</string>
 <key>CFBundleTypeIconFile</key>
 <string>Jalview-File.icns</string>
 <key>CFBundleTypeRole</key>
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>application/x-jalview-pir</string>
+<string>application/x-jalview-biojson+json</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -84,7 +159,7 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
-<string>BLC</string>
+<string>blc</string>
 </array>
 <key>CFBundleTypeName</key>
 <string>BLC File</string>
@@ -94,7 +169,7 @@
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>application/x-jalview-blc</string>
+<string>application/x-blc+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -103,17 +178,17 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
-<string>amsa</string>
+<string>aln</string>
 </array>
 <key>CFBundleTypeName</key>
-<string>AMSA File</string>
+<string>Clustal File</string>
 <key>CFBundleTypeIconFile</key>
 <string>Jalview-File.icns</string>
 <key>CFBundleTypeRole</key>
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>application/x-jalview-amsa</string>
+<string>application/x-clustal+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -122,17 +197,18 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
-<string>html</string>
+<string>fa</string>
+<string>fasta</string>
 </array>
 <key>CFBundleTypeName</key>
-<string>HTML File</string>
+<string>Fasta File</string>
 <key>CFBundleTypeIconFile</key>
 <string>Jalview-File.icns</string>
 <key>CFBundleTypeRole</key>
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>application/x-jalview-html</string>
+<string>application/x-fasta+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -141,18 +217,18 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
-<string>xml</string>
-<string>rnaml</string>
+<string>features</string>
+<string>jvfeatures</string>
 </array>
 <key>CFBundleTypeName</key>
-<string>RNAML File</string>
+<string>Jalview Features File</string>
 <key>CFBundleTypeIconFile</key>
 <string>Jalview-File.icns</string>
 <key>CFBundleTypeRole</key>
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>application/x-jalview-rnaml</string>
+<string>application/x-jalview-features+text</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -161,17 +237,17 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
-<string>json</string>
+<string>gff2</string>
 </array>
 <key>CFBundleTypeName</key>
-<string>JSON File</string>
+<string>Generic Features Format v2 File</string>
 <key>CFBundleTypeIconFile</key>
 <string>Jalview-File.icns</string>
 <key>CFBundleTypeRole</key>
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>application/x-jalview-json</string>
+<string>application/x-gff2+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -180,17 +256,17 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
-<string>pileup</string>
+<string>gff3</string>
 </array>
 <key>CFBundleTypeName</key>
-<string>PileUp File</string>
+<string>Generic Features Format v3 File</string>
 <key>CFBundleTypeIconFile</key>
 <string>Jalview-File.icns</string>
 <key>CFBundleTypeRole</key>
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>application/x-jalview-pileup</string>
+<string>application/x-gff3+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -199,17 +275,18 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
-<string>msf</string>
+<string>concise</string>
+<string>jnet</string>
 </array>
 <key>CFBundleTypeName</key>
-<string>MSF File</string>
+<string>JnetFile File</string>
 <key>CFBundleTypeIconFile</key>
 <string>Jalview-File.icns</string>
 <key>CFBundleTypeRole</key>
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>application/x-jalview-msf</string>
+<string>application/x-jalview-jnet+text</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -218,17 +295,17 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
-<string>aln</string>
+<string>msf</string>
 </array>
 <key>CFBundleTypeName</key>
-<string>Clustal File</string>
+<string>MSF File</string>
 <key>CFBundleTypeIconFile</key>
 <string>Jalview-File.icns</string>
 <key>CFBundleTypeRole</key>
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>application/x-jalview-clustal</string>
+<string>application/x-msf+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -237,17 +314,17 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
-<string>phy</string>
+<string>pfam</string>
 </array>
 <key>CFBundleTypeName</key>
-<string>PHYLIP File</string>
+<string>PFAM File</string>
 <key>CFBundleTypeIconFile</key>
 <string>Jalview-File.icns</string>
 <key>CFBundleTypeRole</key>
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>application/x-jalview-phylip</string>
+<string>application/x-pfam+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -256,16 +333,17 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
+<string>phy</string>
 </array>
 <key>CFBundleTypeName</key>
-<string>JnetFile File</string>
+<string>PHYLIP File</string>
 <key>CFBundleTypeIconFile</key>
 <string>Jalview-File.icns</string>
 <key>CFBundleTypeRole</key>
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>application/x-jalview-jnet</string>
+<string>application/x-phylip+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -274,18 +352,17 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
-<string>gff2</string>
-<string>gff3</string>
+<string>pileup</string>
 </array>
 <key>CFBundleTypeName</key>
-<string>GFF or Jalview features File</string>
+<string>PileUp File</string>
 <key>CFBundleTypeIconFile</key>
 <string>Jalview-File.icns</string>
 <key>CFBundleTypeRole</key>
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>application/x-jalview-features</string>
+<string>application/x-pileup+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -294,16 +371,17 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
+<string>pir</string>
 </array>
 <key>CFBundleTypeName</key>
-<string>Substitution matrix File</string>
+<string>PIR File</string>
 <key>CFBundleTypeIconFile</key>
 <string>Jalview-File.icns</string>
 <key>CFBundleTypeRole</key>
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>application/x-jalview-scorematrix</string>
+<string>application/x-pir+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -312,18 +390,17 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
-<string>pdb</string>
-<string>ent</string>
+<string>rnaml</string>
 </array>
 <key>CFBundleTypeName</key>
-<string>PDB File</string>
+<string>RNAML File</string>
 <key>CFBundleTypeIconFile</key>
 <string>Jalview-File.icns</string>
 <key>CFBundleTypeRole</key>
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>application/x-jalview-pdb</string>
+<string>application/rnaml+xml</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -332,17 +409,17 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
-<string>cif</string>
+<string>mat</string>
 </array>
 <key>CFBundleTypeName</key>
-<string>mmCIF File</string>
+<string>Substitution Matrix File</string>
 <key>CFBundleTypeIconFile</key>
 <string>Jalview-File.icns</string>
 <key>CFBundleTypeRole</key>
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>application/x-jalview-mmcif</string>
+<string>application/x-jalview-scorematrix+text</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -351,18 +428,18 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
-<string>jvp</string>
-<string>jar</string>
+<string>sto</string>
+<string>stk</string>
 </array>
 <key>CFBundleTypeName</key>
-<string>Jalview File</string>
+<string>Stockholm File</string>
 <key>CFBundleTypeIconFile</key>
 <string>Jalview-File.icns</string>
 <key>CFBundleTypeRole</key>
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>application/x-jalview-jalview</string>
+<string>application/x-stockholm+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>